DR908231

Overview
NameDR908231
Unique NameDR908231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39A6_HUMAN (Zinc transporter ZIP6 OS=Homo sapiens GN=SLC39A6 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  233 VQSASNLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSL-IEGFTAGGFIYIAVAGVLAEMNSNGNS 619
            ++ A      ++ +  DG+HNF+DG+A+G+AF   G   G S ++ +  HE+P E+GDF +L+++G +V +A+ +N LS              G      S+ I   TAG F+Y+A+  ++ EM  N  S
Sbjct:  581 LKDAGVATLAWMVIMGDGLHNFSDGLAIGAAFT-EGLSSGLSTSVAVFCHELPHELGDFAVLLKAGMTVKQAVLYNALSAMLAYLGMATGIFIGHYAENVSMWIFALTAGLFMYVALVDMVPEMLHNDAS 709          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AC_BOVIN (Zinc transporter ZIP12 OS=Bos taurus GN=SLC39A12 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  272 LFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEM 601
            L  D +HNF DG+ +G+AF    S  G + T+ +L HEIP E+GDF +L+ SG  V  A+  NF+S                DP   + I   TAG F+Y+++  +L EM
Sbjct:  508 LVGDSLHNFADGLVIGAAFSS-SSEAGVTTTIAILCHEIPHEMGDFAVLLSSGLPVKIAILMNFISALTAFIGLYIGLSVSTDPCIQNWILTVTAGMFLYLSLVEMLPEM 616          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: YLW3_SCHPO (Uncharacterized zinc transporter P8A3.03 OS=Schizosaccharomyces pombe GN=SPAP8A3.03 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 47/124 (37.90%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  263 YLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLS-----XXXXXXXXXXXXXXGQDPGQSSLIE------GFTAGGFIYIAVAGVLAEM 601
            YLNL  D  HNF DG+A+ SAF    S+G  S T  +L HEIP E+GD  IL+R+G++ S+ L    ++                      P  S L++       FTAGGF+YIA  GV  E+
Sbjct:  298 YLNLLCDSFHNFMDGLAITSAFFTNTSIG-ISTTFAVLLHEIPAEIGDLAILLRNGYTKSQVLVLQMITMVTGLLGAIVATYIYTASSSSSPYGSFLLQLEDKLLPFTAGGFLYIAYLGVFPEL 420          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AD_DANRE (Zinc transporter ZIP13 OS=Danio rerio GN=slc39a13 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  260 GYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPG---QSSLIEGFTAGGFIYIAVAGV---LAEMNSNGNSMLKVL 634
            GYLNL ++ + NFT G+A+  +FL+   VG +  T  +L HEIP EVGDF IL+R+GF   KA      +                  G    ++ I  FT+GGF+YIA+  V   L E  +  NS+L+VL
Sbjct:  202 GYLNLLANCIDNFTHGLAVAGSFLVSRKVG-FLTTFAILLHEIPHEVGDFAILLRAGFDRWKAARMQLSTALGGVLGACFALCSQSQHGAENATTWILPFTSGGFLYIALVNVVPDLLEETNPRNSLLQVL 331          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AE_PONAB (Zinc transporter ZIP14 OS=Pongo abelii GN=SLC39A14 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  278 SDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEMN 604
            SDG+HNF DG+A+G++F +     G S ++ +L  E P E+GDF IL+ +G S+ +ALFFNFLS              G     ++ I     G F+YI++A +  EMN
Sbjct:  341 SDGLHNFIDGLAIGASFTV-SVFQGISTSVAILCEEFPHELGDFVILLNAGMSIQQALFFNFLSACCCYLGLAFGILAGSH-FSANWIFALAGGMFLYISLADMFPEMN 447          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AE_HUMAN (Zinc transporter ZIP14 OS=Homo sapiens GN=SLC39A14 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  278 SDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEMN 604
            SDG+HNF DG+A+G++F +     G S ++ +L  E P E+GDF IL+ +G S+ +ALFFNFLS              G     ++ I     G F+YI++A +  EMN
Sbjct:  343 SDGLHNFIDGLAIGASFTV-SVFQGISTSVAILCEEFPHELGDFVILLNAGMSIQQALFFNFLSACCCYLGLAFGILAGSH-FSANWIFALAGGMFLYISLADMFPEMN 449          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AE_BOVIN (Zinc transporter ZIP14 OS=Bos taurus GN=SLC39A14 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  278 SDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEMN 604
            SDG+HNF DG+A+G++F +     G S ++ +L  E P E+GDF IL+ +G S+ +ALFFNFLS              G     ++ I     G F+YI++A +  EMN
Sbjct:  341 SDGLHNFIDGLAIGASFTV-SVFQGISTSVAILCEEFPHELGDFVILLNAGMSLQQALFFNFLSACCCYVGLGFGILAGSH-FSANWIFALAGGMFLYISLADMFPEMN 447          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AD_CHICK (Zinc transporter ZIP13 OS=Gallus gallus GN=SLC39A13 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 51/134 (38.06%), Postives = 75/134 (55.97%), Query Frame = 2
Query:  254 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDP---GQS-SLIEGFTAGGFIYIAVAGV---LAEMNSNGNSMLKVL 634
            + GYLNL ++ + NFT G+A+ ++FL+   VG +  T+ +L HEIP EVGDF IL+R+GF    A     LS               Q P   G++ + I  FT+GGF+YIA+  V   L E  +  NS+ ++L
Sbjct:  220 ISGYLNLLANTIDNFTHGLAVAASFLVSRKVG-FLTTMAILLHEIPHEVGDFAILLRAGFDRWSAAKMQ-LSTALGGIVGACFAICAQSPKGAGETVAWILPFTSGGFLYIALVNVVPDLLEEKNPWNSLQQIL 351          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AD_PONAB (Zinc transporter ZIP13 OS=Pongo abelii GN=SLC39A13 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  236 QSASNLVFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGF---SVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEM 601
            +  ++ V GYLNL ++ + NFT G+A+ ++FL+   +G  + T+ +L HEIP EVGDF IL+R+GF   S +K      L                     ++ +  FT+GGF+YIA+  VL ++
Sbjct:  174 EEGTSQVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLLT-TMAILLHEIPHEVGDFAILLRAGFDRWSAAKLQLSTALGGLLGAGFAICTQSPKGVEETAAWVLPFTSGGFLYIALVNVLPDL 297          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AD_MOUSE (Zinc transporter ZIP13 OS=Mus musculus GN=Slc39a13 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  254 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSL---IEGFTAGGFIYIAVAGVLAEM 601
            V GYLNL ++ + NFT G+A+ ++FL+   +G  + T+ +L HEIP EVGDF IL+R+GF    A    F +                  G       I  FT+GGF+YIA+  VL ++
Sbjct:  213 VSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLLT-TMAILLHEIPHEVGDFAILLRAGFDRWTAAKLQFSTALGGLLGACFAICTQSPKGVEETVVWILPFTSGGFLYIALVNVLPDL 330          
The following BLAST results are available for this feature:
BLAST of DR908231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
S39A6_HUMAN2.296e-1332.31Zinc transporter ZIP6 OS=Homo sapiens GN=SLC39A6 P... [more]
S39AC_BOVIN2.998e-1337.27Zinc transporter ZIP12 OS=Bos taurus GN=SLC39A12 P... [more]
YLW3_SCHPO3.916e-1337.90Uncharacterized zinc transporter P8A3.03 OS=Schizo... [more]
S39AD_DANRE3.916e-1338.17Zinc transporter ZIP13 OS=Danio rerio GN=slc39a13 ... [more]
S39AE_PONAB5.114e-1338.53Zinc transporter ZIP14 OS=Pongo abelii GN=SLC39A14... [more]
S39AE_HUMAN5.114e-1338.53Zinc transporter ZIP14 OS=Homo sapiens GN=SLC39A14... [more]
S39AE_BOVIN8.723e-1338.53Zinc transporter ZIP14 OS=Bos taurus GN=SLC39A14 P... [more]
S39AD_CHICK8.723e-1338.06Zinc transporter ZIP13 OS=Gallus gallus GN=SLC39A1... [more]
S39AD_PONAB2.538e-1234.40Zinc transporter ZIP13 OS=Pongo abelii GN=SLC39A13... [more]
S39AD_MOUSE2.538e-1236.97Zinc transporter ZIP13 OS=Mus musculus GN=Slc39a13... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16359 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908231 ID=DR908231; Name=DR908231; organism=Citrus sinensis; type=EST; length=689bp
ATTGAAGGATGATGATGATCTTGGAAAAACACAATCAGAATCTTCCAGTG
GAACTGAAGGAATCGTTTCAGATGAGGTGTCAGAAGACTCTTTGAATGGG
GATAATCTTGCTCAACATGAAACTCTTCTTCGGAGGAGAAAGACGACTTC
TGTTGATGGAGATTATAAATCAGATGTAGATGCTGCAGATGGCTCTTCCA
GTGACGTTAAATCCTCAGAAAAGAAAGAACCTGTTCAATCAGCTTCCAAT
CTCGTGTTTGGTTATCTCAATCTCTTTTCTGATGGTGTTCATAATTTTAC
CGATGGAATGGCTCTGGGAAGTGCTTTTCTACTTTATGGATCTGTTGGTG
GATGGTCTAGAACCTTGTTTTTGCTTGCCCATGAGATCCCTCAAGAGGTT
GGTGATTTTGGTATTTTGGTAAGATCAGGTTTCAGCGTATCAAAAGCTCT
CTTCTTCAACTTTCTCTCAGCTCTTGTGGCTCTGGCAGGAACTGCAATGG
CTTTGCTCTTAGGACAAGATCCAGGACAGTCATCTTTGATCGAGGGTTTT
ACCGCAGGCGGGTTTATATACATTGCAGTTGCTGGGGTGCTCGCAGAAAT
GAATAGCAATGGCAACTCAATGTTGAAAGTTCTGCATCCAGTTGACTCCC
TGATTTGGGCATGTCTGTTGCCTTGTATTCCCTTGTAGA
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