DR908231

Overview
NameDR908231
Unique NameDR908231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39AD_RAT (Zinc transporter ZIP13 OS=Rattus norvegicus GN=Slc39a13 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  254 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIE---GFTAGGFIYIAVAGVLAEM 601
            V GYLNL ++ + NFT G+A+ ++FL+   +G  + T+ +L HEIP EVGDF IL+R+GF    A    F +                  G    +     FT+GGF+Y+A+  VL ++
Sbjct:  214 VSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLLT-TMAILLHEIPHEVGDFAILLRAGFDRWTAAKLQFSTALGGLLGACFAICTQSPKGVEETVVWTLPFTSGGFLYVALVNVLPDL 331          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: Y816_DROME (Uncharacterized protein CG7816 OS=Drosophila melanogaster GN=CG7816 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 46/120 (38.33%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  254 VFGYLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLS----XXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEM 601
            V GYLNL ++ + NFT G+A+  +FL+     G   T  +L HEIP EVGDF IL+RSGFS   A     L+                       ++S I  FTAGGF++IA+  VL ++
Sbjct:  205 VAGYLNLLANSIDNFTHGLAVAGSFLV-SFRHGILATFAILLHEIPHEVGDFAILLRSGFSRWDAARAQLLTAGAGLLGALVAIGGSGVTSAMEARTSWIMPFTAGGFLHIALVTVLPDL 323          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39A8_RAT (Zinc transporter ZIP8 OS=Rattus norvegicus GN=Slc39a8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  281 DGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEMN 604
            D +HNF DG+A+G+++ L   + G S ++ +L  E P E+GDF IL+ +G S  +AL FNFLS              G +    ++I     G F+YI++A +  EMN
Sbjct:  313 DALHNFIDGLAIGASYTL-SLLQGLSTSIAILCEEFPHELGDFVILLNAGMSTRQALLFNFLSACSCYVGLAFGILVGNN-FAPNIIFALAGGMFLYISLADMFPEMN 418          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39A4_BOVIN (Zinc transporter ZIP4 OS=Bos taurus GN=SLC39A4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 39/113 (34.51%), Postives = 56/113 (49.56%), Query Frame = 2
Query:  263 YLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEM 601
            Y+    D VHNF DG+A+G+AFL     G  + +L +  HE+P E+GDF  L+ +G SV +AL  N  S              G      + I    AG F+Y+A+  +L  M
Sbjct:  504 YVITLGDAVHNFADGLAVGAAFLSSWKTG-LATSLAVFCHEVPHELGDFAALLHAGLSVRRALLLNVASALTAFIGLYVALAAGVGEDGETWILAVAAGLFLYVALCDMLPAM 615          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39A5_HUMAN (Zinc transporter ZIP5 OS=Homo sapiens GN=SLC39A5 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query:  263 YLNLFSDGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDP-GQSSLIEGFTAGGFIYIAVAGVL 592
            ++ L  DG+HN TDG+A+G+AF   G   G S TL +  HE+P E+GDF +L++SG S  + L  + +S                 P   +  + G TAG F+Y+A+  +L
Sbjct:  384 WMVLLGDGLHNLTDGLAIGAAFS-DGFSSGLSTTLAVFCHELPHELGDFAMLLQSGLSFRRLLLLSLVSGALGLGGAVLGVGLSLGPVPLTPWVFGVTAGVFLYVALVDML 493          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39A8_MOUSE (Zinc transporter ZIP8 OS=Mus musculus GN=Slc39a8 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  281 DGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEMN 604
            D +HNF DG+A+G++  L   + G S ++ +L  E P E+GDF IL+ +G S  +AL FNFLS              G +    ++I     G F+YI++A +  EMN
Sbjct:  313 DALHNFIDGLAIGASCTL-SLLQGLSTSIAILCEEFPHELGDFVILLNAGMSTRQALLFNFLSACSCYVGLAFGILVGNN-FAPNIIFALAGGMFLYISLADMFPEMN 418          
BLAST of DR908231 vs. ExPASy Swiss-Prot
Match: S39A8_HUMAN (Zinc transporter ZIP8 OS=Homo sapiens GN=SLC39A8 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  281 DGVHNFTDGMALGSAFLLYGSVGGWSRTLFLLAHEIPQEVGDFGILVRSGFSVSKALFFNFLSXXXXXXXXXXXXXXGQDPGQSSLIEGFTAGGFIYIAVAGVLAEMN 604
            D +HNF DG+A+G++  L   + G S ++ +L  E P E+GDF IL+ +G S  +AL FNFLS              G +    ++I     G F+YI++A +  EMN
Sbjct:  311 DALHNFIDGLAIGASCTL-SLLQGLSTSIAILCEEFPHELGDFVILLNAGMSTRQALLFNFLSACSCYVGLAFGILVGNN-FAPNIIFALAGGMFLYISLADMFPEMN 416          
The following BLAST results are available for this feature:
BLAST of DR908231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
S39AD_RAT3.315e-1235.29Zinc transporter ZIP13 OS=Rattus norvegicus GN=Slc... [more]
Y816_DROME1.645e-1138.33Uncharacterized protein CG7816 OS=Drosophila melan... [more]
S39A8_RAT1.645e-1136.11Zinc transporter ZIP8 OS=Rattus norvegicus GN=Slc3... [more]
S39A4_BOVIN2.806e-1134.51Zinc transporter ZIP4 OS=Bos taurus GN=SLC39A4 PE=... [more]
S39A5_HUMAN3.665e-1135.14Zinc transporter ZIP5 OS=Homo sapiens GN=SLC39A5 P... [more]
S39A8_MOUSE6.252e-1136.11Zinc transporter ZIP8 OS=Mus musculus GN=Slc39a8 P... [more]
S39A8_HUMAN6.252e-1136.11Zinc transporter ZIP8 OS=Homo sapiens GN=SLC39A8 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16359 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908231 ID=DR908231; Name=DR908231; organism=Citrus sinensis; type=EST; length=689bp
ATTGAAGGATGATGATGATCTTGGAAAAACACAATCAGAATCTTCCAGTG
GAACTGAAGGAATCGTTTCAGATGAGGTGTCAGAAGACTCTTTGAATGGG
GATAATCTTGCTCAACATGAAACTCTTCTTCGGAGGAGAAAGACGACTTC
TGTTGATGGAGATTATAAATCAGATGTAGATGCTGCAGATGGCTCTTCCA
GTGACGTTAAATCCTCAGAAAAGAAAGAACCTGTTCAATCAGCTTCCAAT
CTCGTGTTTGGTTATCTCAATCTCTTTTCTGATGGTGTTCATAATTTTAC
CGATGGAATGGCTCTGGGAAGTGCTTTTCTACTTTATGGATCTGTTGGTG
GATGGTCTAGAACCTTGTTTTTGCTTGCCCATGAGATCCCTCAAGAGGTT
GGTGATTTTGGTATTTTGGTAAGATCAGGTTTCAGCGTATCAAAAGCTCT
CTTCTTCAACTTTCTCTCAGCTCTTGTGGCTCTGGCAGGAACTGCAATGG
CTTTGCTCTTAGGACAAGATCCAGGACAGTCATCTTTGATCGAGGGTTTT
ACCGCAGGCGGGTTTATATACATTGCAGTTGCTGGGGTGCTCGCAGAAAT
GAATAGCAATGGCAACTCAATGTTGAAAGTTCTGCATCCAGTTGACTCCC
TGATTTGGGCATGTCTGTTGCCTTGTATTCCCTTGTAGA
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