DR908229 | Citrus Genome Database

Overview


Name	DR908229
Unique Name	DR908229
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	689

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 9.877e-65
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

HSP 2 Score: 96.6709 bits (239), Expect = 9.877e-65
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 561
            PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:  119 PFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESC 205

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.877e-65
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

HSP 2 Score: 96.6709 bits (239), Expect = 9.877e-65
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY----LPDTIDVGNSSQPRSSGCEC 561
            PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y     P  +D  + ++  +  C C
Sbjct:  119 PFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPKPIKLDKNDRAKASAESCSC 207

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 9.877e-65
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

HSP 2 Score: 96.6709 bits (239), Expect = 9.877e-65
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 561
            PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:  119 PFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESC 205

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.877e-65
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

HSP 2 Score: 96.6709 bits (239), Expect = 9.877e-65
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 561
            PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:  119 PFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESC 205

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.877e-65
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

HSP 2 Score: 96.6709 bits (239), Expect = 9.877e-65
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 561
            PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:  119 PFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKTSAESC 205

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7_NEUCR (Probable Ras-related protein Rab7 OS=Neurospora crassa GN=17E5.300 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.173e-62
Identity = 81/102 (79.41%), Postives = 90/102 (88.24%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFS  YKATIGADFLT+EV  +DR  T+Q+WDTAGQERFQSLGVAFYRGADCCVLVYDVN+ KSFD L++WR+EFLIQASP DPD  P +
Sbjct:   20 GKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFV 121

HSP 2 Score: 88.9669 bits (219), Expect = 1.173e-62
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 561
            PFVVLGNKID++  + RV+S K+A  +C SKGNIPYFETSAKE INVE+AF+ IA+NAL   E EE        +    +    GC C
Sbjct:  119 PFVVLGNKIDMEE-SKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEESEEFSGDFQDPINIHIENDRDGCAC 205

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7A_RABIT (Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.391e-62
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSL VAFYRGADCCVLV+DV +  +F  L++WR EFLIQASP DP+  P +
Sbjct:   20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFV 121

HSP 2 Score: 92.4337 bits (228), Expect = 3.391e-62
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY----LPDTIDVGNSSQPRSSGCEC 561
            PFVVLGNKID++   +R V+ K+A+AW  SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y     P  +D  + ++  +  C C
Sbjct:  119 PFVVLGNKIDLE---NRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPMKLDKNDRAKTSAESCSC 207

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPT7_SCHPO (GTP-binding protein ypt7 OS=Schizosaccharomyces pombe GN=ypt7 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.087e-60
Identity = 78/102 (76.47%), Postives = 92/102 (90.20%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTS+MNQYVN+KFS  YKATIGADFLTKEV  +D++ TLQ+WDTAGQERFQSLGVAFYRGADCCVLVYDVN+ KSF+ L++WR+EFLIQASPS+P+  P +
Sbjct:   20 GKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFI 121

HSP 2 Score: 82.8037 bits (203), Expect = 3.087e-60
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 561
            PF++LGNK+DV+    R+VS+ KA A+C ++G IPYFETSAKE INV+EAF+ +AK AL++ + ++I    T  +    + + + C C
Sbjct:  119 PFILLGNKVDVEE-QKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHLDMESQKTSCYC 205

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.719e-48
Identity = 69/103 (66.99%), Postives = 87/103 (84.47%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV +  SF+N+ +WR+EFL+ A+ + P+  P +
Sbjct:   20 GKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122

HSP 2 Score: 63.5438 bits (153), Expect = 1.719e-48
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGN-SSQPRSSGCEC 561
            PFV+LGNKID +  + ++VSEK A+    S G+IP F TSAK  INV+ AF+ IA++AL+  + + E +  D  D  N      ++ C C
Sbjct:  120 PFVILGNKIDAEE-SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQADTEAFEDDYNDAINIRLDGENNSCSC 208

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPT71_SCHPO (GTP-binding protein ypt71 OS=Schizosaccharomyces pombe GN=ypt71 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.019e-47
Identity = 69/95 (72.63%), Postives = 84/95 (88.42%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 286
            GKT LMNQ+VN+KFS +YKATIGADFLTK+V  +D+L TLQ+WDTAGQERFQSLG+AFYRGADCCV+VY+VN+ KSFD++ NWR+EFL Q S  +
Sbjct:   20 GKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114

HSP 2 Score: 55.0694 bits (131), Expect = 7.019e-47
Identity = 32/92 (34.78%), Postives = 54/92 (58.70%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQP--RSSGCEC 561
            PF+++GN+ID D  + R VS  +A  +C SK   N+ +FE SAKE  NV + F+ +++ AL++    + ++ D  +    S+P   +S C C
Sbjct:  118 PFIIVGNQIDKDA-SKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLALENESSRDDFVNDFSEPLLLSKPLNNTSSCNC 208

The following BLAST results are available for this feature:

BLAST of DR908229 vs. ExPASy Swiss-Prot

BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB7A_RAT	9.877e-65	78.43	Ras-related protein Rab-7a OS=Rattus norvegicus GN...	[more]
RAB7A_PONAB	9.877e-65	78.43	Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7...	[more]
RAB7A_MOUSE	9.877e-65	78.43	Ras-related protein Rab-7a OS=Mus musculus GN=Rab7...	[more]
RAB7A_HUMAN	9.877e-65	78.43	Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7...	[more]
RAB7A_CANFA	9.877e-65	78.43	Ras-related protein Rab-7a OS=Canis familiaris GN=...	[more]
RAB7_NEUCR	1.173e-62	79.41	Probable Ras-related protein Rab7 OS=Neurospora cr...	[more]
RAB7A_RABIT	3.391e-62	77.45	Ras-related protein Rab-7a OS=Oryctolagus cuniculu...	[more]
YPT7_SCHPO	3.087e-60	76.47	GTP-binding protein ypt7 OS=Schizosaccharomyces po...	[more]
YPT7_YEAST	1.719e-48	66.99	GTP-binding protein YPT7 OS=Saccharomyces cerevisi...	[more]
YPT71_SCHPO	7.019e-47	72.63	GTP-binding protein ypt71 OS=Schizosaccharomyces p...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC