DR908229 | Citrus Genome Database

Overview


Name	DR908229
Unique Name	DR908229
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	689

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB21_HUMAN (Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 2.216e-20
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDTAGQERF +LG  +YR ++  +LVYD+    SF  + NW +E
Sbjct:   31 GKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE 116

HSP 2 Score: 36.1946 bits (82), Expect = 2.216e-20
Identity = 20/63 (31.75%), Postives = 38/63 (60.32%), Query Frame = 1

Query:  307 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 495
            ++GNKID++    R VS ++A ++  S G   ++ TSAK+   +EE F  + K  +++ + +E
Sbjct:  129 IVGNKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIETAQVDE 188

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB21_CANFA (Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 2.217e-20
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDTAGQERF +LG  +YR ++  +LVYD+    SF  + NW +E
Sbjct:   29 GKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE 114

HSP 2 Score: 36.1946 bits (82), Expect = 2.217e-20
Identity = 20/63 (31.75%), Postives = 38/63 (60.32%), Query Frame = 1

Query:  307 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 495
            ++GNKID++    R VS ++A ++  S G   ++ TSAK+   +EE F  + K  +++ + +E
Sbjct:  127 IVGNKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIETAQVDE 186

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.219e-20
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +L YD+   ++FDN+  W  E
Sbjct:   24 GKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRE 109

HSP 2 Score: 37.3502 bits (85), Expect = 2.219e-20
Identity = 33/96 (34.38%), Postives = 50/96 (52.08%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ--------CIAKNALKSGE-EEEIYLP---DTIDVGNSSQPRSSGC 555
            ++ GNK D+   + R VSE+  +A    +G + + ETSA E +NV++AFQ         I+K AL + E      LP    TI+V ++S     GC
Sbjct:  121 ILAGNKSDLK--HLRAVSEQDDQALVKKEG-LSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKRGC 213

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.221e-20
Identity = 37/102 (36.27%), Postives = 65/102 (63.73%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPL 304
            GKTS++ +YV++ FS+ Y+ATIG DF  K + ++ + +  LQ+WD AGQERF ++   +YR A    +V+DV    +F+ +  W+ +  + +  + P+G P+
Sbjct:   21 GKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKND--LDSKLTLPNGKPV 120

HSP 2 Score: 43.5134 bits (101), Expect = 2.221e-20
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 474
            V+L NK D  G +  + +  K   +C   G + +FETSAKE IN++EA +C+ K+ L
Sbjct:  123 VLLANKCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHIL 178

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.223e-20
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E
Sbjct:   23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 108

HSP 2 Score: 36.5798 bits (83), Expect = 2.223e-20
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 477
            +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A    K
Sbjct:  120 LLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 174

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.223e-20
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E
Sbjct:   23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 108

HSP 2 Score: 36.5798 bits (83), Expect = 2.223e-20
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 477
            +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A    K
Sbjct:  120 LLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 174

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.223e-20
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E
Sbjct:   23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 108

HSP 2 Score: 36.5798 bits (83), Expect = 2.223e-20
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 477
            +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A    K
Sbjct:  120 LLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 174

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.223e-20
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E
Sbjct:   23 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE 108

HSP 2 Score: 36.5798 bits (83), Expect = 2.223e-20
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 477
            +++GNK D+     +VV    A+ +  S G IP+ ETSAK   NVE++F  +A    K
Sbjct:  120 LLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 174

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.225e-20
Identity = 34/86 (39.53%), Postives = 57/86 (66.28%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E
Sbjct:   20 GKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHE 105

HSP 2 Score: 37.3502 bits (85), Expect = 2.225e-20
Identity = 24/58 (41.38%), Postives = 33/58 (56.90%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK 477
            +++GNK D+     RVVS   A+ +  S G I + ETSAK   NVE+AF  +A    K
Sbjct:  117 LLVGNKSDLTA--KRVVSTDAAKEFAESLG-IEFLETSAKNAANVEKAFMMMAAQIKK 171

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.225e-20
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GK+ L+ ++    F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +L+YDV   KSFDN+  W
Sbjct:   21 GKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTW 103

HSP 2 Score: 38.1206 bits (87), Expect = 2.225e-20
Identity = 25/78 (32.05%), Postives = 42/78 (53.85%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALK---SGEEEEIYLPDTIDVGN 528
            +++GNK D +  + R VS ++ +A     G + + E SAK  +NV+EAF  +A+   K     E E     + +D+GN
Sbjct:  118 ILIGNKCDCE--DQRQVSFEQGQALADELG-VKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVDLGN 192

The following BLAST results are available for this feature:

BLAST of DR908229 vs. ExPASy Swiss-Prot

BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB21_HUMAN	2.216e-20	44.19	Ras-related protein Rab-21 OS=Homo sapiens GN=RAB2...	[more]
RAB21_CANFA	2.217e-20	44.19	Ras-related protein Rab-21 OS=Canis familiaris GN=...	[more]
RB11A_TOBAC	2.219e-20	39.53	Ras-related protein Rab11A OS=Nicotiana tabacum GN...	[more]
RAB38_MOUSE	2.221e-20	36.27	Ras-related protein Rab-38 OS=Mus musculus GN=Rab3...	[more]
RAB1A_RAT	2.223e-20	39.53	Ras-related protein Rab-1A OS=Rattus norvegicus GN...	[more]
RAB1A_MOUSE	2.223e-20	39.53	Ras-related protein Rab-1A OS=Mus musculus GN=Rab1...	[more]
RAB1A_HUMAN	2.223e-20	39.53	Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1...	[more]
RAB1A_CANFA	2.223e-20	39.53	Ras-related protein Rab-1A OS=Canis familiaris GN=...	[more]
YPT1_PHYIN	2.225e-20	39.53	Ras-like GTP-binding protein YPT1 OS=Phytophthora ...	[more]
YPT2_SCHPO	2.225e-20	43.37	GTP-binding protein ypt2 OS=Schizosaccharomyces po...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC