DR908229

Overview
NameDR908229
Unique NameDR908229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.780e-43
Identity = 83/102 (81.37%), Postives = 89/102 (87.25%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYV+KKFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFD L NW EEFL QA+P DP   P +
Sbjct:   20 GKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFI 121          

HSP 2 Score: 117.087 bits (292), Expect = 8.986e-26
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  277 PFGSRRGPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 561
            P   R  PF++LGNKID+DGGNSRVVSEKKA+ WCA+KGNIPYFETSAKE  NV+ AF CIAK AL +  E++IY     +       + SGC C
Sbjct:  112 PPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEDYNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC 206          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.194e-43
Identity = 82/102 (80.39%), Postives = 89/102 (87.25%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GKTSLMNQYV+KKFS QYKATIGADF+TKE+Q +DRL TLQIWDTAGQERFQSLGVAFYRGADCCVL YDVN MKSFD L+NW EEFL QA+P DP   P +
Sbjct:   20 GKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPFI 121          

HSP 2 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  277 PFGSRRGPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 561
            P   R  PF++LGNKID+DGGNSRVVSEKKA+ WCASKGNIPYFETSAKE  NV+ AF CIAK AL +  E++IY     +       + SGC C
Sbjct:  112 PPDPRSFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC 206          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.648e-42
Identity = 55/102 (53.92%), Postives = 74/102 (72.55%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DPD  P +
Sbjct:   19 GKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFV 120          

HSP 2 Score: 70.0922 bits (170), Expect = 1.648e-42
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 555
            PFVVLGNK+D +    R V+ ++A+AWC   GN PY ETSAK+  NV  AF+   +  L   E+ E   L  TID+ + S+  SS C
Sbjct:  118 PFVVLGNKVDKE---DRQVTTEEAQAWCMENGNYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSKASSSCC 201          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.785e-41
Identity = 51/102 (50.00%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P+  P +
Sbjct:   19 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120          

HSP 2 Score: 71.633 bits (174), Expect = 1.785e-41
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGNSSQPRSSGC 555
            PFV+LGNKID+   + R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L + +  + +   DT+++    +P SS C
Sbjct:  118 PFVILGNKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVNLHRKPKPSSSCC 201          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.326e-41
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP+  P +
Sbjct:   19 GKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120          

HSP 2 Score: 67.781 bits (164), Expect = 2.326e-41
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 555
            PFVVLGNK+D +    R V+ ++A+AWC   G+ PY ETSAK+  NV  AF+   +  L   E+ E   L  TID+ + S+  SS C
Sbjct:  118 PFVVLGNKVDKE---DRQVTTEEAQAWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSKAGSSCC 201          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.326e-41
Identity = 51/102 (50.00%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P+  P +
Sbjct:   19 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120          

HSP 2 Score: 71.2478 bits (173), Expect = 2.326e-41
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGNSSQPRSSGC 555
            PFV+LGNKID+   + R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L + +  + +   DT+ +    +P SS C
Sbjct:  118 PFVILGNKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVSLHRKPKPSSSCC 201          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.031e-41
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P+  P +
Sbjct:   19 GKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120          

HSP 2 Score: 70.4774 bits (171), Expect = 3.031e-41
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGNSSQPRSSGC 555
            PFV+LGNK D+     R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L + +  E +   DT+++    +P SS C
Sbjct:  118 PFVILGNKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSEHLIQTDTVNLHRKPKPNSSCC 201          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.705e-41
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQIWDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DP+  P +
Sbjct:   19 GKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120          

HSP 2 Score: 66.2402 bits (160), Expect = 6.705e-41
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 555
            PFVVLGNK+D +    R V+ ++A+ WC   G+ PY ETSAK+  NV  AF+   +  L   E+ E   L  TID+ + S+  SS C
Sbjct:  118 PFVVLGNKVDKE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGHTIDLNSGSKAGSSCC 201          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 6.705e-41
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +P+  P +
Sbjct:   19 GKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120          

HSP 2 Score: 69.3218 bits (168), Expect = 6.705e-41
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE-EEEIYLPDTIDVGNSSQPRSSGC 555
            PFV+LGNK D+     R VS ++A+AWC   G+ PYFETSAK+  NV  AF+   +  L + +  + +   DT+++    +P SS C
Sbjct:  118 PFVILGNKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSDHLIQTDTVNLHRKPKPNSSCC 201          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7B_BOVIN (Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.842e-35
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 286
            GKTSL+++YV+K F   Y+ T+GA  L+K +  ED    LQIWDT GQERF+S+   FY+G+D CVL +DV  ++SF+ L  WR + L +  P +
Sbjct:   20 GKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPME 114          

HSP 2 Score: 68.5514 bits (166), Expect = 4.842e-35
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 555
            P VVLGNKID++    R V ++ A+ WC  K +IPYFE SAK  INV +AF+ +A  AL       E YL D+I +    QP+S  C
Sbjct:  118 PMVVLGNKIDLE---DRQVPQEVAQGWCKEK-DIPYFEVSAKNDINVVQAFEMLASRALSRYRSILESYLTDSIKLSPEDQPKSRCC 200          
The following BLAST results are available for this feature:
BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7_SOYBN2.780e-4381.37Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
RAB7_VIGAC6.194e-4380.39Ras-related protein Rab7 OS=Vigna aconitifolia PE=... [more]
RAB9B_MOUSE1.648e-4253.92Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9A_HUMAN1.785e-4150.00Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB9B_PONAB2.326e-4152.94Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9A_CANFA2.326e-4150.00Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB9A_MOUSE3.031e-4150.00Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB9B_HUMAN6.705e-4152.94Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAB9A_RAT6.705e-4150.00Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RAB7B_BOVIN4.842e-3547.37Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC
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