DR908229

Overview
NameDR908229
Unique NameDR908229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.246e-32
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 286
            GKTSL++QYV+K F  +Y+ T+GA  L+K +  +D    LQIWDT GQERF+S+   FY+G+D C+L +DV   +SF+ L+ WR++ L +  P +
Sbjct:   20 GKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPME 114          

HSP 2 Score: 60.8474 bits (146), Expect = 1.246e-32
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNA-LKSGEEEEIYLPDTIDVGNSSQPRSSGC 555
            P VVLGNKID++    R VS++    WC  K ++PYFE SAK  INV +AF+ +A  A L+     E +L D+I + +  QP+S  C
Sbjct:  118 PMVVLGNKIDLE---DRKVSQEVVHGWCKEK-DMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKL-SPGQPKSRCC 199          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.667e-32
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDP 289
            GKTS++ +YV+K+F    K TIG DF    V   + + TLQ+WDT+GQERF+SL +++YRGAD C+LV+DV + K+  +L  WR++F+ +    DP
Sbjct:   19 GKTSILRRYVDKRFVT-LKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDP 109          

HSP 2 Score: 63.929 bits (154), Expect = 4.667e-32
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASK--GNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 555
            PF++LGNKID     +RVV+EK A  WC     GN+ YF+TSAK+ IN+E+ F+ I+       +  EI     I +      +SS C
Sbjct:  113 PFIILGNKID---DPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHISNQCENQPQSNEIPPEQLISLTEKKSNQSSCC 197          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.028e-31
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD 286
            GKTSL++QYV+K F  +Y+ T+GA  L+K +   D    LQIWDT GQERF+S+   FY+G+D C+L +DV  ++SF+ L+ WR + L +  P +
Sbjct:   20 GKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPME 114          

HSP 2 Score: 56.9954 bits (136), Expect = 5.028e-31
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE-EEIYLPDTIDVGNSSQPRSSGC 555
            P V+LGNKID+     R V ++ A+ WC  K +IPYFE SAK  INV +AF+ +A  AL   +   E +L ++I + +  Q RS  C
Sbjct:  118 PMVLLGNKIDLA---DRKVPQEVAQGWCREK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENHLTESIKL-SPDQSRSRCC 199          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.561e-25
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 277
            GKT L+ ++    F+N Y +TIG DF  + V+ E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:   20 GKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          

HSP 2 Score: 42.743 bits (99), Expect = 4.561e-25
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSS 549
            ++LGNK D++    +V+ E+  +   A +  I +FETSAK  +NV+EAF  +A++  LKSG             GN S+P S+
Sbjct:  117 LLLGNKCDMEA-KRKVLKEQADKL--AREHGIRFFETSAKSSMNVDEAFNSLARDILLKSGGRRS---------GNHSKPSST 187          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.561e-25
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 277
            GKT L+ ++    F++ Y +TIG DF  + V+ E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:   20 GKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          

HSP 2 Score: 44.669 bits (104), Expect = 4.561e-25
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSS 549
            ++LGNK D++    R V  ++A    A +  I +FETSAK  +NV+EAF  +A++  LK+G             GNSS+P S+
Sbjct:  117 LLLGNKCDMEA--KRKVQREQAER-LAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRS---------GNSSKPSST 187          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.309e-24
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 277
            GKT L+ ++    F+N Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:   20 GKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          

HSP 2 Score: 41.9726 bits (97), Expect = 1.309e-24
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSS 549
            ++LGNK D++    R V +++A       G I +FETSAK  +NV+EAF  +A++  LKSG             GN ++P S+
Sbjct:  117 LLLGNKCDMEA--KRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDILLKSGGRRS---------GNGNKPPST 187          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB27B_MOUSE (Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.700e-24
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD 292
            GKT+ + +Y + KF+ ++  T+G DF  K V ++ +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD
Sbjct:   21 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 127          

HSP 2 Score: 55.4546 bits (132), Expect = 1.700e-24
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGNS-----SQPRSSGCEC 561
            V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE++ + +    +K  E+  E+  +PDT++ GNS      +P    C C
Sbjct:  129 VLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 218          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.704e-24
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 277
            GKT L+ ++    F++ Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:   20 GKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          

HSP 2 Score: 43.5134 bits (101), Expect = 1.704e-24
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSSG 552
            ++LGNK D++    R V  ++A    A +  I +FETSAK  +NV+EAF  +A++  LK+G             G +S+P S+G
Sbjct:  117 LLLGNKCDMEA--KRQVQREQAEK-LAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRS---------GTNSKPSSTG 188          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 2.212e-24
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD 292
            GKT+ + +Y + KF+ ++  T+G DF  K V +  +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD
Sbjct:   21 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 127          

HSP 2 Score: 56.225 bits (134), Expect = 2.212e-24
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGNS-----SQPRSSGCEC 561
            V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE+A + +    +K  E+  E+  +PDT++ GNS      +P    C C
Sbjct:  129 VLIGNKADLP--DQREVNERQARE-LADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.217e-24
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 277
            GKT L+ ++    F+N Y +TIG DF  + V  E +   LQ+WDTAGQERF+++  A+YRGA   +LVYD+   KSF+N+ NW +     AS
Sbjct:   20 GKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS 111          

HSP 2 Score: 41.2022 bits (95), Expect = 2.217e-24
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSG 483
            ++LGNK D++    R V +++A       G I +FETSAK  +NV+EAF  +A++  LKSG
Sbjct:  117 LLLGNKCDMEA--KRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDILLKSG 174          
The following BLAST results are available for this feature:
BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7B_MOUSE1.246e-3246.32Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB7B_DICDI4.667e-3246.88Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAB7B_HUMAN5.028e-3146.32Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
RAB13_MESAU4.561e-2545.65Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB13_RAT4.561e-2544.57Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_HUMAN1.309e-2445.65Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RB27B_MOUSE1.700e-2437.38Ras-related protein Rab-27B OS=Mus musculus GN=Rab... [more]
RAB13_MOUSE1.704e-2444.57Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RB27B_HUMAN2.212e-2437.38Ras-related protein Rab-27B OS=Homo sapiens GN=RAB... [more]
RAB13_BOVIN2.217e-2445.65Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC
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