DR908229

Overview
NameDR908229
Unique NameDR908229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.218e-24
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GK++L+ Q+V+K+F+     TIG +F ++ +   D+   LQIWDTAGQE+F+S+  A+YRGA C ++VYD+    SF++LN+W
Sbjct:   36 GKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSW 118          

HSP 2 Score: 43.5134 bits (101), Expect = 2.218e-24
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGE 486
            V++GNK D++   +R VS  +A+ + A K  + +FETSAK  +NV+EAF+   +  LK  E
Sbjct:  133 VLIGNKADLEA--NRQVSTSEAKEF-AEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLE 190          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RBH1B_ARATH (Ras-related protein RABH1B OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.884e-24
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKTS++ +++  KF N Y+ATIG DFL+K +  EDR   LQ+WDTAGQERF+SL  ++ R +   V+VYDV S +SF N   W +E
Sbjct:   21 GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDE 106          

HSP 2 Score: 39.6614 bits (91), Expect = 2.884e-24
Identity = 28/94 (29.79%), Postives = 48/94 (51.06%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA-----KNALKSGEEE---EIYLPDTIDVGNSSQPRSSGCEC 561
            V++GNK D+       + E +A+A    + N+ + ETSAK G N++  F+ IA        L S ++E   ++ L  +    + +Q +S GC C
Sbjct:  118 VLVGNKTDLVDKRQVSIEEAEAKA---RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKSSNANASLAQQQSGGCSC 208          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RABN1_DICDI (Ras-related protein RabN1 OS=Dictyostelium discoideum GN=rabN1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.075e-23
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKT++ N++  +KF   Y      D   KE+  +D L     WDTAGQERF SL   FYR A+CCVL +D+++ +SF NL+ W  E
Sbjct:   20 GKTAIFNEFAGRKFGI-YTCPSTFDLFYKEIMIDDELVGYHFWDTAGQERFTSLNRHFYRNANCCVLCFDIHNEESFKNLDKWITE 104          

HSP 2 Score: 49.2914 bits (116), Expect = 1.075e-23
Identity = 30/96 (31.25%), Postives = 50/96 (52.08%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGN------IPYFETSAKEGINVEEAFQCIAKNAL----KSGEEEEIYLPDTIDVGNSSQPRSSGC 555
            PFV++G K D+     + +S ++   WC +  +      + YFETSAK   N++E F  I+K AL       +  E  L  T+++ N++  +SS C
Sbjct:  122 PFVLIGTKSDIPR-TDKSISNERIEQWCKNIEDQRIIDKVHYFETSAKNSKNIKEPFNIISKFALNYFNSMQKLNESKLNPTLEISNNNNIKSSSC 216          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.820e-23
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD 292
            GKT+ + +Y + KF+ ++  T+G DF  K V +  +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD
Sbjct:   21 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVAYNTQGPNGPTGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 127          

HSP 2 Score: 52.373 bits (124), Expect = 1.820e-23
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGNSS 534
            V++GNK D+   + R V+E++AR   A K +IPYFETSA  G NVE+A + +    +K  E+  E+ ++PDT++ G+SS
Sbjct:  129 VLIGNKADLP--DQREVNERQARD-LAEKYSIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTHIPDTVN-GSSS 203          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.821e-23
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 277
            GK+ L+ ++ +  F++ +  TIG DF  K+V  + +L  LQIWDTAGQERF+++  A+YRGA   +LVYD+    SF+N+ NW       AS
Sbjct:   25 GKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHAS 116          

HSP 2 Score: 43.5134 bits (101), Expect = 1.821e-23
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE 492
            +++GNK+D+   + RVVS  + +A  A +    ++ETSAK+ ++VEEAF  +AK+ L   E E
Sbjct:  122 ILVGNKLDL-AEDKRVVSIARGQA-LADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGE 182          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB27B_RAT (Ras-related protein Rab-27B OS=Rattus norvegicus GN=Rab27b PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.010e-23
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD 292
            GKT+ + +Y + KF+ ++  T+G DF  K V ++ +             LQ+WDTAGQERF+SL  AF+R A   +L++D+ S +SF N+ NW  +    A   +PD
Sbjct:   21 GKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 127          

HSP 2 Score: 50.8322 bits (120), Expect = 4.010e-23
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGNS-----SQPRSSGCEC 561
            V++GNK D+   + R V+E++AR   A K  IPYFETSA  G NVE++ + +    +K  E+  E+  +PDT++  NS      +P    C C
Sbjct:  129 VLIGNKADLL--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKTQVPDTVNGVNSGKVDGEKPAEKKCAC 218          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 5.220e-23
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+++++++    FS   K+TIG +F TK +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   +SFDN++ W  E    A  S
Sbjct:   24 GKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSS 117          

HSP 2 Score: 39.2762 bits (90), Expect = 5.220e-23
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCI 459
            +++GNK D+   + R VSE + +A  A K  + + ETSA E +NVEEAFQ I
Sbjct:  121 MMVGNKSDLI--HLRAVSEDEGKA-LAEKEGLFFLETSAMEAVNVEEAFQTI 169          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.782e-23
Identity = 43/98 (43.88%), Postives = 69/98 (70.41%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDG 295
            GKTS++++ +  KF+ +YK+TIGADFL+K     D +  +Q+WDTAGQE++  L  AF+R +D  +LV+D+++  SF NLN W ++F  ++   +PDG
Sbjct:   21 GKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQF--KSKSINPDG 116          

HSP 2 Score: 35.039 bits (79), Expect = 6.782e-23
Identity = 17/66 (25.76%), Postives = 33/66 (50.00%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 495
            P ++L NK D     +R V + +   WC       Y+E SAK  IN++E+   + +  ++  ++ +
Sbjct:  122 PILLLANKSD---SLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVIIEQDKDSD 184          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.150e-22
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125          

HSP 2 Score: 38.891 bits (89), Expect = 1.150e-22
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 1
Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT----IDVGNSSQPRSSGC 555
            GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK  L   E +   +  T    +D+   +QP  S C
Sbjct:  132 GNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKK-LPKNEPQNPGINCTRGRGVDLTEPTQPTRSQC 212          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.150e-22
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125          

HSP 2 Score: 38.891 bits (89), Expect = 1.150e-22
Identity = 29/85 (34.12%), Postives = 43/85 (50.59%), Query Frame = 1
Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT----IDVGNSSQPRSSGC 555
            GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK  L   E +      T    +D+   +QP  S C
Sbjct:  132 GNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKK-LPKNEPQNPGANSTRGRGVDLTEPTQPTRSQC 212          
The following BLAST results are available for this feature:
BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_DICDI2.218e-2445.78Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RBH1B_ARATH2.884e-2451.16Ras-related protein RABH1B OS=Arabidopsis thaliana... [more]
RABN1_DICDI1.075e-2344.19Ras-related protein RabN1 OS=Dictyostelium discoid... [more]
RB27B_BOVIN1.820e-2337.38Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]
YPTV2_VOLCA1.821e-2343.48GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RB27B_RAT4.010e-2337.38Ras-related protein Rab-27B OS=Rattus norvegicus G... [more]
RGP2_ORYSJ5.220e-2342.55Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB32D_DICDI6.782e-2343.88Ras-related protein Rab-32D OS=Dictyostelium disco... [more]
RAB5A_PIG1.150e-2244.68Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_BOVIN1.150e-2244.68Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC
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