DR908229

Overview
NameDR908229
Unique NameDR908229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RASEF_DANRE (RAS and EF-hand domain-containing protein OS=Danio rerio GN=rasef PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+S + +    +F    + T+G DF  K++  +     LQIWDTAGQERF+S+  +++R A   +L+YDV S  SF N+  W E+
Sbjct:  479 GKSSFLLRLSLNEFRGDIQTTLGVDFQIKKMLVDGEKTNLQIWDTAGQERFRSIARSYFRKAHGVLLLYDVTSESSFLNVREWVEQ 564          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB33_CIOIN (Putative Ras-related protein Rab-33 OS=Ciona intestinalis GN=COS41.2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKT L  ++   KF  + +ATIG DF  + +  +     LQ+WDTAGQERF +S+   +YR     V  YDV   +SF  L +W EE
Sbjct:   27 GKTCLTYRFCTGKFPEKTEATIGVDFRERTLDIDGEQIKLQLWDTAGQERFRKSMVPHYYRNVHAVVFTYDVTKGRSFQGLPSWIEE 113          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.007e-11
Identity = 27/86 (31.40%), Postives = 50/86 (58.14%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++++RE+
Sbjct:   15 GKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQ 99          

HSP 2 Score: 38.1206 bits (87), Expect = 1.007e-11
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 489
            P V++GNK D+    +R V  K+A+    S G IP+ ETSAK    V++AF  + +   K  E+
Sbjct:  110 PMVLVGNKCDLP---TRTVDTKQAQDLARSFG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEK 169          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: LET60_CAEEL (Ras protein let-60 OS=Caenorhabditis elegans GN=let-60 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.009e-11
Identity = 34/102 (33.33%), Postives = 53/102 (51.96%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK++L  Q +   F  +Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  +LV+ VN  KSF+N+ N+RE+        D D  P++
Sbjct:   15 GKSALTIQLIQNHFVEEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQI---RRVKDSDDVPMV 112          

HSP 2 Score: 33.4982 bits (75), Expect = 1.009e-11
Identity = 24/69 (34.78%), Postives = 35/69 (50.72%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNS--RVVSEKKARAWCASKG-NIPYFETSAKEGINVEEAFQCIAKNALKSGEEEE 495
            P V++GNK D+   +   R VSE        +KG  IP  +TSAK  + V+EAF  + +   K  E  +
Sbjct:  110 PMVLVGNKCDLSSRSVDFRTVSE-------TAKGYGIPNVDTSAKTRMGVDEAFYTLVREIRKHRERHD 171          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.009e-11
Identity = 27/86 (31.40%), Postives = 50/86 (58.14%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++++RE+
Sbjct:   15 GKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQ 99          

HSP 2 Score: 38.1206 bits (87), Expect = 1.009e-11
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P V++GNK D+    SR V  K+A+    S G IP+ ETSAK    VE+AF  + +
Sbjct:  110 PMVLVGNKCDLP---SRSVDTKQAQDLARSYG-IPFIETSAKTRQRVEDAFYTLVR 161          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB33B_CHICK (Ras-related protein Rab-33B OS=Gallus gallus GN=RAB33B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKT L  ++   +F  + +ATIG DF  + V  +     +Q+WDTAGQERF +S+   +YR     V VYD+ ++ SF +L +W EE
Sbjct:   43 GKTCLTYRFCAGRFPQRTEATIGVDFRERAVTIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNLASFHSLPSWIEE 129          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 1.298e-11
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 561
            P V++GNK D++  N R V   +A ++ AS  ++ YFE SAK  +NV+EAF+ + +   K  E+E   LP +    ++ + +  GC C
Sbjct:  136 PIVLVGNKADLE--NQRQVLRSEASSFSASH-HMTYFEASAKLRLNVDEAFEQLVRAVRKYQEQE---LPPS--PPSAPRKKDGGCPC 215          

HSP 2 Score: 43.1282 bits (100), Expect = 1.298e-11
Identity = 26/80 (32.50%), Postives = 42/80 (52.50%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNL 241
            GK++L  Q++   F + Y  TI  D  TK    +     L I DTAGQE F ++   + R  +  +LV+ +N  +SF+ +
Sbjct:   41 GKSALTIQFIQSYFVSDYDPTI-EDSYTKICTVDGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEV 119          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RASN_PONAB (GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 1.308e-11
Identity = 31/102 (30.39%), Postives = 53/102 (51.96%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF ++N +RE+        D D  P++
Sbjct:   15 GKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGLLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMV 112          

HSP 2 Score: 37.7354 bits (86), Expect = 1.308e-11
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P V++GNK D+    +R V  K+A     S G IP+ ETSAK    VE+AF  + +
Sbjct:  110 PMVLVGNKCDLP---TRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 161          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RASN_CHICK (GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.308e-11
Identity = 31/102 (30.39%), Postives = 53/102 (51.96%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF ++N +RE+        D D  P++
Sbjct:   15 GKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMV 112          

HSP 2 Score: 38.1206 bits (87), Expect = 1.308e-11
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P V++GNK D+    +R V  K+A+    S G IP+ ETSAK    VE+AF  + +
Sbjct:  110 PMVLVGNKCDLP---TRTVDTKQAQELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 161          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RASK_MSVKI (GTPase KRas OS=Kirsten murine sarcoma virus GN=K-RAS PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.308e-11
Identity = 26/86 (30.23%), Postives = 49/86 (56.98%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R  +  + V+ +N+ KSF++++++RE+
Sbjct:   15 GKSALTIQLIQNHFVDEYDPTI-QDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQ 99          

HSP 2 Score: 39.2762 bits (90), Expect = 1.308e-11
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P V++GNK D+    SR V  K+A+    S G IP+ ETSAK    VE+AF  + +
Sbjct:  110 PMVLVGNKCDLP---SRTVDTKQAQELARSYG-IPFIETSAKTRQRVEDAFYTLVR 161          
The following BLAST results are available for this feature:
BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASEF_DANRE9.645e-1239.53RAS and EF-hand domain-containing protein OS=Danio... [more]
RAB33_CIOIN9.645e-1241.38Putative Ras-related protein Rab-33 OS=Ciona intes... [more]
RASK_ORYLA1.007e-1131.40GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
LET60_CAEEL1.009e-1133.33Ras protein let-60 OS=Caenorhabditis elegans GN=le... [more]
RAS_CARAU1.009e-1131.40Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RB33B_CHICK1.260e-1140.23Ras-related protein Rab-33B OS=Gallus gallus GN=RA... [more]
RRAS_MOUSE1.298e-1135.23Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RASN_PONAB1.308e-1130.39GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1[more]
RASN_CHICK1.308e-1130.39GTPase NRas OS=Gallus gallus GN=NRAS PE=2 SV=1[more]
RASK_MSVKI1.308e-1130.23GTPase KRas OS=Kirsten murine sarcoma virus GN=K-R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC
back to top