DR908229

Overview
NameDR908229
Unique NameDR908229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 2.208e-11
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFL 265
            GK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + +     +LVY + + +SF ++   R++ +
Sbjct:   15 GKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101

HSP 2 Score: 36.5798 bits (83), Expect = 2.208e-11
Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P +++GNK+D++  + R VS  + RA  A +   P+ ETSAK    V+E F  I +
Sbjct:  110 PVILVGNKVDLE--SEREVSSNEGRA-LAEEWGCPFMETSAKSKTMVDELFAEIVR 162
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.208e-11
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFL 265
            GK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + +     +LVY + + +SF ++   R++ +
Sbjct:   15 GKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101

HSP 2 Score: 36.5798 bits (83), Expect = 2.208e-11
Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P +++GNK+D++  + R VS  + RA  A +   P+ ETSAK    V+E F  I +
Sbjct:  110 PVILVGNKVDLE--SEREVSSSEGRA-LAEEWGCPFMETSAKSKTMVDELFAEIVR 162
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB40C_MOUSE (Ras-related protein Rab-40C OS=Mus musculus GN=Rab40c PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.811e-11
Identity = 27/86 (31.40%), Postives = 48/86 (55.81%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK  ++    +    + Y  + G D+ T  +  + R   L++WDT+GQ RF ++  ++ RGA   +LVYD+ +  SFD ++ W +E
Sbjct:   26 GKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKE 111

HSP 2 Score: 30.8018 bits (68), Expect = 2.811e-11
Identity = 21/73 (28.77%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTI 516
            P +++GN++ +     R V  ++ARA+ A K  + +FE S     NV E+F  +++  L     E+I+ P+ +
Sbjct:  120 PRILVGNRLHL--AFKRQVPTEQARAY-AEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKIWRPNRV 189
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB40C_HUMAN (Ras-related protein Rab-40C OS=Homo sapiens GN=RAB40C PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.811e-11
Identity = 27/86 (31.40%), Postives = 48/86 (55.81%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK  ++    +    + Y  + G D+ T  +  + R   L++WDT+GQ RF ++  ++ RGA   +LVYD+ +  SFD ++ W +E
Sbjct:   26 GKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKE 111

HSP 2 Score: 30.8018 bits (68), Expect = 2.811e-11
Identity = 21/73 (28.77%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTI 516
            P +++GN++ +     R V  ++ARA+ A K  + +FE S     NV E+F  +++  L     E+I+ P+ +
Sbjct:  120 PRILVGNRLHL--AFKRQVPTEQARAY-AEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKIWRPNRV 189
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RSR1_YEAST (Ras-related protein RSR1 OS=Saccharomyces cerevisiae GN=RSR1 PE=1 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 2.815e-11
Identity = 30/102 (29.41%), Postives = 52/102 (50.98%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPLL 307
            GK+ L  Q+V   + + Y  TI  D   K ++ ++++F L+I DTAG  +F ++   + +     +LVY V   +S + L   RE+ L      D D  P++
Sbjct:   15 GKSCLTVQFVQGVYLDTYDPTI-EDSYRKTIEIDNKVFDLEILDTAGIAQFTAMRELYIKSGMGFLLVYSVTDRQSLEELMELREQVL---RIKDSDRVPMV 112

HSP 2 Score: 41.9726 bits (97), Expect = 2.815e-11
Identity = 25/75 (33.33%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  286 SRRGPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPD 510
            S R P V++GNK D+   N RV+S ++     +  G +P++ETSA    NV+E F  + +  +++ E E + + D
Sbjct:  106 SDRVPMVLIGNKADLI--NERVISVEEGIEVSSKWGRVPFYETSALLRSNVDEVFVDLVRQIIRN-EMESVAVKD 177
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.839e-11
Identity = 23/86 (26.74%), Postives = 44/86 (51.16%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110

HSP 2 Score: 34.2686 bits (77), Expect = 2.839e-11
Identity = 21/56 (37.50%), Postives = 30/56 (53.57%), Query Frame = 1 
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P V+ GNK+DV    +R V  K+       K N+ Y+E SAK   N E+ F  +A+
Sbjct:  119 PIVLCGNKVDV---KNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLAR 169
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.839e-11
Identity = 23/86 (26.74%), Postives = 44/86 (51.16%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110

HSP 2 Score: 34.2686 bits (77), Expect = 2.839e-11
Identity = 21/56 (37.50%), Postives = 30/56 (53.57%), Query Frame = 1 
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P V+ GNK+DV    +R V  K+       K N+ Y+E SAK   N E+ F  +A+
Sbjct:  119 PIVLCGNKVDV---KNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLAR 169
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.839e-11
Identity = 23/86 (26.74%), Postives = 44/86 (51.16%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110

HSP 2 Score: 34.2686 bits (77), Expect = 2.839e-11
Identity = 21/56 (37.50%), Postives = 30/56 (53.57%), Query Frame = 1 
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P V+ GNK+DV    +R V  K+       K N+ Y+E SAK   N E+ F  +A+
Sbjct:  119 PIVLCGNKVDV---KNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLAR 169
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 2.839e-11
Identity = 23/86 (26.74%), Postives = 44/86 (51.16%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110

HSP 2 Score: 34.2686 bits (77), Expect = 2.839e-11
Identity = 21/56 (37.50%), Postives = 30/56 (53.57%), Query Frame = 1 
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P V+ GNK+DV    +R V  K+       K N+ Y+E SAK   N E+ F  +A+
Sbjct:  119 PIVLCGNKVDV---KNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLAR 169
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 54.6842 bits (130), Expect = 2.839e-11
Identity = 23/86 (26.74%), Postives = 44/86 (51.16%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +
Sbjct:   25 GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110

HSP 2 Score: 34.2686 bits (77), Expect = 2.839e-11
Identity = 21/56 (37.50%), Postives = 30/56 (53.57%), Query Frame = 1 
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAK 465
            P V+ GNK+DV    +R V  K+       K N+ Y+E SAK   N E+ F  +A+
Sbjct:  119 PIVLCGNKVDV---KNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLAR 169
The following BLAST results are available for this feature:
BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP2A_MOUSE2.208e-1131.82Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAP2A_HUMAN2.208e-1131.82Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]
RB40C_MOUSE2.811e-1131.40Ras-related protein Rab-40C OS=Mus musculus GN=Rab... [more]
RB40C_HUMAN2.811e-1131.40Ras-related protein Rab-40C OS=Homo sapiens GN=RAB... [more]
RSR1_YEAST2.815e-1129.41Ras-related protein RSR1 OS=Saccharomyces cerevisi... [more]
RAN_VICFA2.839e-1126.74GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANB1_TOBAC2.839e-1126.74GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]
RANA1_TOBAC2.839e-1126.74GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH2.839e-1126.74GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_ARATH2.839e-1126.74GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC
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