DR908229 | Citrus Genome Database

Overview


Name	DR908229
Unique Name	DR908229
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	689

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.150e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP+
Sbjct:   33 GKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPN 126

HSP 2 Score: 40.0466 bits (92), Expect = 1.150e-22
Identity = 29/84 (34.52%), Postives = 41/84 (48.81%), Query Frame = 1

Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPD---TIDVGNSSQPRSSGC 555
            GNK D+     R V  + A+ + A   ++ + ETSAK  +NV E F  IAK   K+  +     P     +D+  SSQP  S C
Sbjct:  133 GNKADL--ATKRAVDFQDAQTY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQESSQPSRSQC 213

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.152e-22
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+  + ++ +  + + Y +TIG DF  + V+ E +   LQIWDTAGQERF+++  ++YRGA   ++VYD+  M+SF+N+  W +E
Sbjct:   20 GKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDE 105

HSP 2 Score: 43.5134 bits (101), Expect = 1.152e-22
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 480
            +++GNK D+    +R V    A+A+    G IP+ ETSAKE INVEEAF  ++    KS
Sbjct:  117 LLVGNKCDL--AENRAVDTSVAQAYAQEVG-IPFLETSAKESINVEEAFLAMSAAIKKS 172

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.499e-22
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+ L+ ++ +  +++ + +TIG DF  K +  + +   LQIWDTAGQERF+++  ++YRGA   +LVYD     SF N+  W  E
Sbjct:   22 GKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGE 107

HSP 2 Score: 49.6766 bits (117), Expect = 1.499e-22
Identity = 29/84 (34.52%), Postives = 51/84 (60.71%), Query Frame = 1

Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL-KSGEEEEIYLPDTIDVGNSSQPRSSG 552
            +++GNK D+   N +VV   +A+++  S G IP+ ETSAK   NVEE F  +A++   +  + +E   PD +D+ + ++ +S G
Sbjct:  119 LLVGNKTDLV--NEKVVDSNQAKSFAESYG-IPFIETSAKNATNVEECFISMARDIKNRLADIQETPKPDEVDIKSKNKTKSGG 199

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RABO_DICDI (Ras-related protein RabO OS=Dictyostelium discoideum GN=rabO PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.946e-22
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT+    +  K+F       IG DF  K +  +++   LQ+WDT GQERF+++  +++R   CC+L + V+  KSF+N++ W
Sbjct:   20 GKTTTGFVFDGKQFDFSRNCNIGVDFFVKHIVVDNQCVRLQVWDTGGQERFKTITRSYFRNTSCCLLFFSVDDQKSFENIDMW 102

HSP 2 Score: 52.7582 bits (125), Expect = 1.946e-22
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 1

Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCAS-------KGNIPYFETSAKEGINVEEAFQCIAKNALKS 480
            P V++GNKID+      V+++K A  WC +       K +IPYFETSAK  IN+ E F   A+  LK+
Sbjct:  116 PVVLVGNKIDLPQ-EKHVITKKMAEEWCKNQQTKLNLKFSIPYFETSAKNNININEIFYSAAELGLKN 182

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.533e-22
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125

HSP 2 Score: 37.7354 bits (86), Expect = 2.533e-22
Identity = 27/84 (32.14%), Postives = 42/84 (50.00%), Query Frame = 1

Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE---EIYLPDTIDVGNSSQPRSSGC 555
            GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK   K+  +           +D+   +QP  S C
Sbjct:  132 GNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPAQPARSQC 212

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.533e-22
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125

HSP 2 Score: 37.7354 bits (86), Expect = 2.533e-22
Identity = 27/84 (32.14%), Postives = 42/84 (50.00%), Query Frame = 1

Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE---EIYLPDTIDVGNSSQPRSSGC 555
            GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK   K+  +           +D+   +QP  S C
Sbjct:  132 GNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRSQC 212

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.533e-22
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125

HSP 2 Score: 37.7354 bits (86), Expect = 2.533e-22
Identity = 27/84 (32.14%), Postives = 42/84 (50.00%), Query Frame = 1

Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEE---EIYLPDTIDVGNSSQPRSSGC 555
            GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK   K+  +           +D+   +QP  S C
Sbjct:  132 GNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRSQC 212

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPT6_YEAST (GTP-binding protein YPT6 OS=Saccharomyces cerevisiae GN=YPT6 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.533e-22
Identity = 38/86 (44.19%), Postives = 60/86 (69.77%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GKTSL+ +++   F + Y+ATIG DFL+K +  +D+   LQ+WDTAGQERF+SL  ++ R +   ++VYD+   KSF+ ++ W E+
Sbjct:   22 GKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIED 107

HSP 2 Score: 38.1206 bits (87), Expect = 2.533e-22
Identity = 26/97 (26.80%), Postives = 42/97 (43.30%), Query Frame = 1

Query:  307 VLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYL------------PDTIDVGNSSQPRSSGCEC 561
            ++GNK D+   + R +S ++        G   + ETS K G NV+  F+ IAK+  +    E   L            P  ID+  + +   S C+C
Sbjct:  121 IVGNKSDLS--DERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEFQNSESTPLDSENANSANQNKPGVIDISTAEEQEQSACQC 215

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.533e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS
Sbjct:   32 GKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS 125

HSP 2 Score: 38.1206 bits (87), Expect = 2.533e-22
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1

Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 480
            GNK D+   N R+V  ++A+A+ A   ++ + ETSAK  +NV + F  IAK   KS
Sbjct:  132 GNKADL--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 184

[Close]

BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.533e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2

Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS
Sbjct:   32 GKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS 125

HSP 2 Score: 38.1206 bits (87), Expect = 2.533e-22
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1

Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 480
            GNK D+   N R+V  ++A+A+ A   ++ + ETSAK  +NV + F  IAK   KS
Sbjct:  132 GNKADL--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 184

The following BLAST results are available for this feature:

BLAST of DR908229 vs. ExPASy Swiss-Prot

BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB5C_CHICK	1.150e-22	43.62	Ras-related protein Rab-5C OS=Gallus gallus GN=RAB...	[more]
YPTM1_MAIZE	1.152e-22	40.70	GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=...	[more]
RAB1D_DICDI	1.499e-22	39.53	Ras-related protein Rab-1D OS=Dictyostelium discoi...	[more]
RABO_DICDI	1.946e-22	36.14	Ras-related protein RabO OS=Dictyostelium discoide...	[more]
RAB5A_MOUSE	2.533e-22	44.68	Ras-related protein Rab-5A OS=Mus musculus GN=Rab5...	[more]
RAB5A_MACFA	2.533e-22	44.68	Ras-related protein Rab-5A OS=Macaca fascicularis ...	[more]
RAB5A_CANFA	2.533e-22	44.68	Ras-related protein Rab-5A OS=Canis familiaris GN=...	[more]
YPT6_YEAST	2.533e-22	44.19	GTP-binding protein YPT6 OS=Saccharomyces cerevisi...	[more]
RAB5B_PONAB	2.533e-22	43.62	Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5...	[more]
RAB5B_MOUSE	2.533e-22	43.62	Ras-related protein Rab-5B OS=Mus musculus GN=Rab5...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC