DR908229

Overview
NameDR908229
Unique NameDR908229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.533e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS
Sbjct:   32 GKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS 125

HSP 2 Score: 38.1206 bits (87), Expect = 2.533e-22
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 480
            GNK D+   N R+V  ++A+A+ A   ++ + ETSAK  +NV + F  IAK   KS
Sbjct:  132 GNKADL--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 184
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.537e-22
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:   20 GKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102

HSP 2 Score: 40.0466 bits (92), Expect = 2.537e-22
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 552
            ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  S G
Sbjct:  117 MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSSHG 188
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.537e-22
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:   20 GKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102

HSP 2 Score: 40.0466 bits (92), Expect = 2.537e-22
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 552
            ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  S G
Sbjct:  117 MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSSHG 188
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.537e-22
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:   20 GKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102

HSP 2 Score: 40.0466 bits (92), Expect = 2.537e-22
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 552
            ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  + G
Sbjct:  117 MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFYTLARD-IKAKMDKKL-------EGNSPQGSNQG 188
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.296e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP+
Sbjct:   33 GKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN 126

HSP 2 Score: 38.1206 bits (87), Expect = 3.296e-22
Identity = 27/84 (32.14%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT---IDVGNSSQPRSSGC 555
            GNK D+   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IAK   K+  +     P     +D+  +S    S C
Sbjct:  133 GNKADL--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQENSPASRSQC 213
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.304e-22
Identity = 37/94 (39.36%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+ ++ ++ + +F++ Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYD+ SM SF+++  W  +    ASPS
Sbjct:   45 GKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPS 138

HSP 2 Score: 38.5058 bits (88), Expect = 3.304e-22
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 480
            +++GNK D++  + R V  K A+ + A + NIP  ETSAKE   ++EAF  +A +  KS
Sbjct:  142 LIVGNKCDLN--SKRAVDFKIAKKF-ADELNIPIMETSAKESTAIDEAFIKLASDIKKS 197
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.304e-22
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT ++ ++ +  F+  + +TIG DF  K V+ + +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W
Sbjct:   21 GKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103

HSP 2 Score: 43.5134 bits (101), Expect = 3.304e-22
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSS 534
            ++LGNK D+D  + RVV + K        G I +FETSAK  IN+E+AF  +A++ L+    +E   P++ +V  SS
Sbjct:  118 MLLGNKCDMD--DKRVVPKGKGEQIAREHG-IRFFETSAKANINIEKAFLTLAEDILRKTPVKE---PNSENVDISS 188
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.304e-22
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT ++ ++ +  F+  + +TIG DF  K V+ + +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W
Sbjct:   21 GKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103

HSP 2 Score: 43.5134 bits (101), Expect = 3.304e-22
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSS 534
            ++LGNK D+D  + RVV + K        G I +FETSAK  IN+E+AF  +A++ L+    +E   P++ +V  SS
Sbjct:  118 MLLGNKCDMD--DKRVVPKGKGEQIAREHG-IRFFETSAKANINIEKAFLTLAEDILRKTPVKE---PNSENVDISS 188
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.304e-22
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT ++ ++ +  F+  + +TIG DF  K V+ + +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W
Sbjct:   21 GKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKW 103

HSP 2 Score: 43.5134 bits (101), Expect = 3.304e-22
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSS 534
            ++LGNK D+D  + RVV + K        G I +FETSAK  IN+E+AF  +A++ L+    +E   P++ +V  SS
Sbjct:  118 MLLGNKCDMD--DKRVVPKGKGEQIAREHG-IRFFETSAKANINIEKAFLTLAEDILRKTPVKE---PNSENVDISS 188
[Close]
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.289e-22
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 2 
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + +SF    NW +E   QASP+
Sbjct:   32 GKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN 125

HSP 2 Score: 36.965 bits (84), Expect = 4.289e-22
Identity = 22/56 (39.29%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 480
            GNK D+   N R V  ++A+++ A   ++ + ETSAK  +NV E F  IAK   K+
Sbjct:  132 GNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 184
The following BLAST results are available for this feature:
BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5B_HUMAN2.533e-2243.62Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB8A_RAT2.537e-2244.58Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE2.537e-2244.58Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_BOVIN2.537e-2244.58Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB5C_CANFA3.296e-2243.62Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB1C_DICDI3.304e-2239.36Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB10_PONAB3.304e-2243.37Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE3.304e-2243.37Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN3.304e-2243.37Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB5A_HUMAN4.289e-2244.68Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC
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