DR908229

Overview
NameDR908229
Unique NameDR908229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.587e-22
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:   20 GKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102          

HSP 2 Score: 38.1206 bits (87), Expect = 5.587e-22
Identity = 22/57 (38.60%), Postives = 35/57 (61.40%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 474
            ++LGNK D++  + R VS+++        G I + ETSAK   NVEEAF  +A++ +
Sbjct:  117 MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAKSSANVEEAFFTLARDIM 170          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.263e-22
Identity = 35/86 (40.70%), Postives = 59/86 (68.60%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   ++FDN+  W  E
Sbjct:   24 GKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE 109          

HSP 2 Score: 40.4318 bits (93), Expect = 7.263e-22
Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQ--------CIAKNALKSGEEEEIYLP---DTIDVGNSSQPRSSGC 555
            ++ GNK D+   + R VSE+  +A  A K  + + ETSA E +N+E+AFQ         I+K AL + +E    LP    TI+V ++S  +   C
Sbjct:  121 MMAGNKSDLK--HLRAVSEEDGQA-LAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKAL-AAQEASSNLPGQGTTINVADASANQRRSC 211          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.266e-22
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT L+ ++    F+  + +TIG DF  + V+ + +   LQIWDTAGQERF+++  A+YRGA   + VYD+ + KSFDN+ NW
Sbjct:   20 GKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNW 102          

HSP 2 Score: 39.6614 bits (91), Expect = 7.266e-22
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 474
            ++LGNK D++    R VS+++        G I + ETSAK  INVEEAF  +A++ +
Sbjct:  117 MILGNKCDMN--EKRQVSKERGEKLAIDYG-IKFLETSAKSSINVEEAFITLARDIM 170          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.270e-22
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:   20 GKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102          

HSP 2 Score: 38.5058 bits (88), Expect = 7.270e-22
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 552
            ++LGNK DV+  + R VS+++        G I + ETSAK  INVE AF  +A++ +K+  ++++        GNS Q  + G
Sbjct:  117 MILGNKRDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD-IKAKMDKKL-------EGNSPQGSNQG 188          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.270e-22
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP 280
            GKT  + ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSF+N+ NW       ASP
Sbjct:   20 GKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASP 112          

HSP 2 Score: 39.6614 bits (91), Expect = 7.270e-22
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 552
            ++LGNK D +  + R VS ++     AS G I + ETSAK  IN+E AF  +A++ +K+  ++++        GNS Q  + G
Sbjct:  117 MILGNKCDAN--DKRQVSREQGEKLAASFG-IKFMETSAKANINIENAFFTLARD-IKAKMDKKL-------EGNSPQGSNQG 188          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 9.445e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ + ++F     W +E   QASPS
Sbjct:   32 GKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS 125          

HSP 2 Score: 36.1946 bits (82), Expect = 9.445e-22
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1
Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKS 480
            GNK D+   + R+V  ++A+A+ A   ++ + ETSAK  +NV + F  IAK   KS
Sbjct:  132 GNKADL--ASKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKS 184          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.445e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP+
Sbjct:   33 GKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN 126          

HSP 2 Score: 36.5798 bits (83), Expect = 9.445e-22
Identity = 26/84 (30.95%), Postives = 42/84 (50.00%), Query Frame = 1
Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT---IDVGNSSQPRSSGC 555
            GNK D+   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IAK   K+  +     P     +D+  ++    S C
Sbjct:  133 GNKADL--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQC 213          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.445e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP+
Sbjct:   33 GKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN 126          

HSP 2 Score: 36.5798 bits (83), Expect = 9.445e-22
Identity = 26/84 (30.95%), Postives = 42/84 (50.00%), Query Frame = 1
Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT---IDVGNSSQPRSSGC 555
            GNK D+   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IAK   K+  +     P     +D+  ++    S C
Sbjct:  133 GNKADL--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQC 213          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.445e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 283
            GK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER+ SL   +YRGA   ++VYD+ +  +F    NW +E   QASP+
Sbjct:   33 GKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN 126          

HSP 2 Score: 36.5798 bits (83), Expect = 9.445e-22
Identity = 26/84 (30.95%), Postives = 42/84 (50.00%), Query Frame = 1
Query:  313 GNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDT---IDVGNSSQPRSSGC 555
            GNK D+   + R V  ++A+A+ A   ++ + ETSAK  +NV E F  IAK   K+  +     P     +D+  ++    S C
Sbjct:  133 GNKADL--ASKRAVEFQEAQAY-AEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQC 213          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.445e-22
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GK+ L+ ++ +  F+  +  TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYDV    SF+N+ NW
Sbjct:   27 GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW 109          

HSP 2 Score: 42.3578 bits (98), Expect = 9.445e-22
Identity = 28/84 (33.33%), Postives = 45/84 (53.57%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKN-ALKSGEEEEIYLPDTIDVGNSSQPRSSG 552
            +++GNK D+D  + R V   K +A  A +  I +FETSAK  +NVEE F  I ++   +  + +    P TI +  + Q   +G
Sbjct:  124 ILVGNKADMDE-SKRAVPTAKGQA-LADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAG 205          
The following BLAST results are available for this feature:
BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_HUMAN5.587e-2245.78Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RB2BV_BETVU7.263e-2240.70Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB8_DISOM7.266e-2245.78Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8A_PONAB7.270e-2244.58Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_CHICK7.270e-2241.94Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB5B_CHICK9.445e-2243.62Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB5C_PONAB9.445e-2243.62Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_HUMAN9.445e-2243.62Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_BOVIN9.445e-2243.62Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
ARA3_ARATH9.445e-2243.37Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC
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