DR908229

Overview
NameDR908229
Unique NameDR908229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.462e-22
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GK+ L+ ++   +F+  +  TIG DF  + +   ++   LQ+WDTAGQERF+++  A+YRGA   +LVYDV   KSF+N+ NW
Sbjct:   23 GKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENW 105          

HSP 2 Score: 43.1282 bits (100), Expect = 9.462e-22
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA 462
            +++GNK D+D    RVVS ++ +A  A K  IP+ E S+K  INVEE F  +A
Sbjct:  120 ILVGNKCDLD--EKRVVSTEQGQA-LADKFGIPFLEASSKTNINVEECFYSVA 169          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.467e-22
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT ++ ++ +  F+  + +TIG DF  K V+   +   LQIWDTAGQERF ++  ++YRGA   +LVYD+ + KSF+N++ W
Sbjct:   21 GKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKW 103          

HSP 2 Score: 41.9726 bits (97), Expect = 9.467e-22
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSG 552
            ++LGNK D++  + RVV + K     A +  I +FETSAK  IN+E+AF  +A++ L+    +E   PD  +V  S+    +G
Sbjct:  118 MLLGNKCDME--DKRVVLKSKGEQ-IAREHAIRFFETSAKANINIEKAFLTLAEDILQKTPVKE---PDRENVDISTTGGGTG 194          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB27A_HUMAN (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.228e-21
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD 292
            GKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD
Sbjct:   21 GKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD 127          

HSP 2 Score: 44.669 bits (104), Expect = 1.228e-21
Identity = 31/96 (32.29%), Postives = 49/96 (51.04%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTIDVGN--------SSQPRSSGCEC 561
            V+ GNK D++  + RVV E++A A  A K  IPYFETSA  G N+ +A + +    +K  E   ++ ++P+ +   N        S +     C C
Sbjct:  129 VLCGNKSDLE--DQRVVKEEEAIA-LAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.228e-21
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPD 292
            GKTS++ QY + KF++++  T+G DF  K V +            +   LQ+WDTAGQERF+SL  AF+R A   +L++D+ + +SF N+ NW  +  + A   +PD
Sbjct:   21 GKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD 127          

HSP 2 Score: 44.669 bits (104), Expect = 1.228e-21
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE--EEIYLPDTI 516
            V+ GNK D++  + RVV E+ AR   A K  IPYFETSA  G N+ +A + +    +K  E   ++ ++P+ +
Sbjct:  129 VLCGNKSDLE--DQRVVKEEDARG-LAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRMERCVDKSWIPEGV 198          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB32_MOUSE (Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.228e-21
Identity = 38/102 (37.25%), Postives = 65/102 (63.73%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDGAPL 304
            GKTS++ +YV++ FS  Y+ATIG DF  K + ++ R L  LQ+WD AGQERF ++   +Y+ A    +V+D++   +FD +  W+ +  + +    P+G+P+
Sbjct:   35 GKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKND--LDSKVHLPNGSPI 134          

HSP 2 Score: 45.4394 bits (106), Expect = 1.228e-21
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  298 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL---KSGEEEEIYLP--DTIDVGNSSQPRSSGC 555
            P V+L NK D    NS+  S  +   +C   G   +FETSAK+ IN++EA + + +N L   +S   EEI L     ++   +++PRS  C
Sbjct:  135 PAVLLANKCDQKKDNSQ--SPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQQSFPSEEIDLDRIKLVEEPPTTKPRSQCC 223          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.231e-21
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNW 250
            GKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW
Sbjct:   20 GKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 102          

HSP 2 Score: 36.965 bits (84), Expect = 1.231e-21
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNAL 474
            ++LGNK D++  + R VS+++        G I + E SAK  +NVEEAF  +A++ +
Sbjct:  117 MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLEASAKSSMNVEEAFFTLARDIM 170          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.231e-21
Identity = 34/86 (39.53%), Postives = 57/86 (66.28%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+ L+ ++ +  + + Y +TIG DF  + ++ + +   LQIWDTAGQERF+++  ++YRGA   ++VYD   M+SF+N+  W  E
Sbjct:   20 GKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSE 105          

HSP 2 Score: 43.1282 bits (100), Expect = 1.231e-21
Identity = 33/89 (37.08%), Postives = 46/89 (51.69%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA----KNALKSGEEEEIYLPDTIDV-GNSSQPRSSGC 555
            +++GNK D+    S+VVS +  RA     G IP+ ETSAK+ INVE+AF  IA    K         +   P T+ + G   Q  + GC
Sbjct:  117 LLIGNKNDMV--ESKVVSTETGRALADELG-IPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGC 202          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.602e-21
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+ L+ ++ +  ++  Y +TIG DF  + V+ + ++  LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W  E
Sbjct:   20 GKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAE 105          

HSP 2 Score: 40.4318 bits (93), Expect = 1.602e-21
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIA---KNALKS 480
            +++GNK D+ G   +VV  + A+A+    G IP+ ETSAK   NVE+AF  +A   KN + S
Sbjct:  117 LLVGNKSDLTG--KKVVDYQAAKAFADEIG-IPFLETSAKNATNVEQAFMTMAAEIKNRMAS 175          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.602e-21
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQERF+++   +YRG    ++VYDV S +SF N+  W  E
Sbjct:   20 GKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHE 105          

HSP 2 Score: 41.2022 bits (95), Expect = 1.602e-21
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 489
            +++GNK D      +VV  + A  +    G I  FETSAKE +NVEE F CI +  L++ ++
Sbjct:  116 ILVGNKND--DPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKKD 174          
BLAST of DR908229 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.602e-21
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 2
Query:    2 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREE 259
            GK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQERF+++   +YRG    ++VYDV S +SF N+  W  E
Sbjct:   20 GKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHE 105          

HSP 2 Score: 41.2022 bits (95), Expect = 1.602e-21
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1
Query:  304 VVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEE 489
            +++GNK D      +VV  + A  +    G I  FETSAKE +NVEE F CI +  L++ ++
Sbjct:  116 ILVGNKND--DPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKKD 174          
The following BLAST results are available for this feature:
BLAST of DR908229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RYL1_YARLI9.462e-2243.37Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB10_DISOM9.467e-2243.37Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RB27A_HUMAN1.228e-2138.32Ras-related protein Rab-27A OS=Homo sapiens GN=RAB... [more]
RB27A_CANFA1.228e-2138.32Ras-related protein Rab-27A OS=Canis familiaris GN... [more]
RAB32_MOUSE1.228e-2137.25Ras-related protein Rab-32 OS=Mus musculus GN=Rab3... [more]
RAB8B_BOVIN1.231e-2145.78Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RABD1_ARATH1.231e-2139.53Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
YPTV1_VOLCA1.602e-2140.70GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB35_RAT1.602e-2144.19Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE1.602e-2144.19Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16357 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908229 ID=DR908229; Name=DR908229; organism=Citrus sinensis; type=EST; length=689bp
GGGCAAGACCTCTTTGATGAATCAATATGTAAACAAGAAGTTTAGCAATC
AGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGGAAGTGCAGTTT
GAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCTGGTCAGGAAAG
ATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGATTGCTGTGTAC
TTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACCTCAATAACTGG
AGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCAGACGGGGCCCC
TTTGTTGTTTTAGGAAATAAGATTGATGTAGATGGTGGAAACAGTAGGGT
GGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCTTCCAAAGGAAATATTC
CTTACTTTGAGACCTCTGCAAAAGAAGGCATTAATGTGGAAGAAGCTTTC
CAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGGAGGAGGAAGAGATATA
CTTGCCGGACACCATTGATGTTGGTAACAGCAGCCAGCCAAGGTCAAGTG
GATGCGAGTGCTAAAGATATGGTCTAATTTTTTCAGGAGCAATAAGCAGT
ATAACAAATGATTTGGCCTTTTTAACCATTTTTATGGGTATGTATAAGGT
TACATTGTACATTAGTGTTTGTGTGAAACAAATTGGTTC
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