DR908220

Overview
NameDR908220
Unique NameDR908220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.641e-19
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 3
Query:    6 INASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 233
            I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A K+
Sbjct:  279 IEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKVLEDNSVPQVKDIIFAVKK 355          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.641e-19
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 233
            TI  SV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A K+
Sbjct:  278 TIEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKK 355          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.144e-19
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 242
            TI  SV+KT RLV +EEG+   G+GA I A V++E+F YLDAPVE ++G DVP+PYA NLE++A+P   D++ A K+ CY
Sbjct:  244 TIIESVKKTGRLVVIEEGWFFAGIGATIAAIVMKEAFDYLDAPVEIVSGKDVPLPYAVNLEKLALPSEYDVINAVKKVCY 323          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 3
Query:    6 INASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 233
            I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  279 IEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19
Identity = 44/81 (54.32%), Postives = 63/81 (77.78%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 242
            TI ASV+KTNR+VTV++ + QHG+G+EI A ++E ++F YLDAPVER++ ADVPMPY+  +E  +VP  + +V AAK+  Y
Sbjct:  284 TIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPVEAASVPNADVVVAAAKKCLY 364          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   15 SVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 230
            +V+KTN L+TVE  FP  GVGAEI A V+E E+F YLDAP++R+ GADVP PYA  LE  A P    IV+A K
Sbjct:  288 TVKKTNHLITVESTFPSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVK 360          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 233
            T+  SV KT  LVTVE G+P  GVGAEI A V E ++F YLD P+ R+ G DVPMPYA  LE  A+PQ  D+V+  K+
Sbjct:  279 TVKDSVIKTKHLVTVESGWPNCGVGAEISARVTESDAFGYLDGPILRVTGVDVPMPYAQPLETAALPQPADVVKMVKK 356          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 245
            TI  S+ KTNR+VTVE+G+P   + +EI A  +EE F  LDAPV R+  AD P PYA NLE+  +   E I+ A ++ CYR
Sbjct:  381 TILQSLAKTNRIVTVEDGWPVCSISSEIAAIAMEEGFDNLDAPVLRVTNADTPTPYAENLEKKGLVNPEAIIEAVRKVCYR 461          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES-FSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 236
            +I  SV KT+ LV+VE G+P  G+G+EI A V+E   F  LDAP+ R+ G DVPMPY   LE  A+P  E +V+A K++
Sbjct:  270 SIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAALPTAEHVVKAVKKS 348          
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 239
            TI+ SVRKT++++ VEE     G+GA + A+++E+ F YLDAP++ ++  DVP PY+  LE + V Q   I++A +  C
Sbjct:  245 TISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMC 323          
The following BLAST results are available for this feature:
BLAST of DR908220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ODPB_MOUSE1.641e-1963.64Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN1.641e-1962.82Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICBR2.144e-1955.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RAT2.800e-1962.34Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO6.237e-1954.32Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST9.958e-1758.90Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ASCSU6.454e-1655.13Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO8.430e-1649.38Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CAEEL3.542e-1449.37Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CHAGL1.488e-1241.77Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16348 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908220 ID=DR908220; Name=DR908220; organism=Citrus sinensis; type=EST; length=691bp
CCACAATCAATGCTTCTGTCAGAAAAACTAACAGACTGGTAACAGTTGAA
GAAGGGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTAT
TGAGGAAAGCTTCAGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAG
CTGATGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCA
CAGGTTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACAGATCTGT
GCCAATGGCTGCTGCAGCATAAAAGAACTGATTCTGCCCTGAAGCTTTGT
CAGATCCTGGTTGGTTTTATTTGCACAAACTATTATCTATTTATTAGTTT
TATAAGGCTTTTTTTTCAGCTGGTGGCTTAAGGTCAATGCTATGGTTCTG
AGTTTCAATTTGCCTATTTATTTAACAACTATTGGATCCTTTCCAGGAAC
AATAGAGGGATTGTACATTTTTCCCATTCTCAACACTTTTTTGGGGGAAT
TGATCATGAAATAATTGGAGATTGTTGATGACAGCAGGAAATTTTGTGGC
TCAGTTTTCTCTTGTTAATGTGGAAAATCAACAAGAAACCAGAGTTTTAT
TGTTTGATTATCAATGTACTGCTACAAGTTTTGTCAGTTCCATGATATTT
CATTAAATGGTGCGTGAATCTGAGTCGTTTGAAAAAAAAAA
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