DR908220

Overview
NameDR908220
Unique NameDR908220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 31/79 (39.24%), Postives = 52/79 (65.82%), Query Frame = 3 
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 239
            TI+ S++KT++++ VEE     G+GA + A+++E  F +LDAP+  ++  DVP PY+  LE + V Q   IV+A ++ C
Sbjct:  245 TISTSIKKTHKVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTPYSGPLEELTVIQPAQIVQAVEQLC 323
[Close]
BLAST of DR908220 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 3 
Query:    3 TINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 239
            TI ASV KT++++ VEE     G+GA + A+++E  F YLDAP+  ++  DVP PY++ LE + V Q   I++  ++ C
Sbjct:  245 TIGASVCKTHKVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTPYSSPLEELTVIQPNQIIQVVEQLC 323
The following BLAST results are available for this feature:
BLAST of DR908220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ODPB_STAPU4.787e-1139.24Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR8.165e-1140.51Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16348 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908220 ID=DR908220; Name=DR908220; organism=Citrus sinensis; type=EST; length=691bp
CCACAATCAATGCTTCTGTCAGAAAAACTAACAGACTGGTAACAGTTGAA
GAAGGGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTAT
TGAGGAAAGCTTCAGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAG
CTGATGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCA
CAGGTTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACAGATCTGT
GCCAATGGCTGCTGCAGCATAAAAGAACTGATTCTGCCCTGAAGCTTTGT
CAGATCCTGGTTGGTTTTATTTGCACAAACTATTATCTATTTATTAGTTT
TATAAGGCTTTTTTTTCAGCTGGTGGCTTAAGGTCAATGCTATGGTTCTG
AGTTTCAATTTGCCTATTTATTTAACAACTATTGGATCCTTTCCAGGAAC
AATAGAGGGATTGTACATTTTTCCCATTCTCAACACTTTTTTGGGGGAAT
TGATCATGAAATAATTGGAGATTGTTGATGACAGCAGGAAATTTTGTGGC
TCAGTTTTCTCTTGTTAATGTGGAAAATCAACAAGAAACCAGAGTTTTAT
TGTTTGATTATCAATGTACTGCTACAAGTTTTGTCAGTTCCATGATATTT
CATTAAATGGTGCGTGAATCTGAGTCGTTTGAAAAAAAAAA
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