DR908209

Overview
NameDR908209
Unique NameDR908209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 313
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF+++ KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 44/118 (37.29%), Postives = 72/118 (61.02%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS--MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEI 439
            M + KI++K+I++AT RQVTFSKRR G  KKA EL+VLCDA V +++FS  GKLF++ S    + E+  ++ + ++N    +    + Q++     + L  E  +    LR+  GE++
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMV--MEITRLRNEIDQLEASLRRQTGEDL 116          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 35/82 (42.68%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKHRV-HSKNLERVD 331
            M R+K++IK+I+N ++RQVTFSKRR G+ +KA +LS+LC++ +A+++ S +GKL++ +S  +M +I++++ + H+  LE +D
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEALD 82          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 38/74 (51.35%), Postives = 56/74 (75.68%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 313
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++  +LF+Y+S+ M  +L K+  +S+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKYTEYSE 74          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 40/79 (50.63%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS---SSMKEILEKHR--VHSK 313
            M R + +IK+I+N T RQ TF KRR G+FKKA EL+VLCDAD+ L++FSA+GKL+ + S    S++E +E++    H+K
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTK 79          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS-SMKEILEKHR 301
            M R K+Q+++I+N   RQVTF KRR G+ KKA ELSVLCDADV +IIFS+ GKL E +++ +M  ++E+++
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQ 71          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 43/130 (33.08%), Postives = 73/130 (56.15%), Query Frame = 2
Query:   71 LASKRKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKH-------RVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEI 439
            ++ K++ + R+KI + KI   + RQVTFSKRR G+FKKA EL  LC A++ +I+FS   K F +   S++ +L+++          S+ L+     S EL +   +  S + +E  +K   + +MR E +
Sbjct:   55 MSKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEV-EEEKKKGQAMEEMRKESV 183          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: SMP1_YEAST (Transcription factor SMP1 OS=Saccharomyces cerevisiae GN=SMP1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPS 340
            M R KI+I+ I +   R VTF KR+ G+FKKA ELSVLC  D+A+II  +    +EYSS  M  +L  H+ ++     + +PS
Sbjct:    1 MGRRKIEIEPIKDDRNRTVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEYSSVDMSNLLNVHQNNTDLPHNIIEPS 83          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: RLM1_YEAST (Transcription factor RLM1 OS=Saccharomyces cerevisiae GN=RLM1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPS 340
            M R KI+I++I +   R VTF KR+ G+FKKA ELSVLC  D+A+II  +    +E+SS    +++  ++     L  V  PS
Sbjct:    1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFSSVDTNDLIYHYQNDKNLLHEVKDPS 83          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 39/116 (33.62%), Postives = 67/116 (57.76%), Query Frame = 2
Query:   83 RKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEK---------HRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEK 403
            +K   R+KI++ K+ N +  QVTFSKRR G+FKKA EL  LC A+VA+++FS   K+F +   ++  ++++         H+ ++  L    + S+ +Q L N+   +L +   EK
Sbjct:    3 KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSI-VQDLNNHLTQVLSQLETEK 117          
The following BLAST results are available for this feature:
BLAST of DR908209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MEF2A_BOVIN1.238e-1451.35Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MAD30_ORYSJ1.238e-1437.29MADS-box transcription factor 30 OS=Oryza sativa s... [more]
AGL31_ARATH1.238e-1442.68Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MEF2B_HUMAN2.112e-1451.35Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MAD32_ORYSJ4.705e-1450.63MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MAD33_ORYSJ6.145e-1453.52MADS-box transcription factor 33 OS=Oryza sativa s... [more]
AGL61_ARATH1.788e-1333.08Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]
SMP1_YEAST2.582e-1243.37Transcription factor SMP1 OS=Saccharomyces cerevis... [more]
RLM1_YEAST1.674e-1140.96Transcription factor RLM1 OS=Saccharomyces cerevis... [more]
AGL62_ARATH2.855e-1133.62Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16337 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908209 ID=DR908209; Name=DR908209; organism=Citrus sinensis; type=EST; length=695bp
CAATATACAAACTCGAGAGCTTTTTATTTCATATAGTTATTCTTTTTCAG
GAAGATCACAGCAGTAACAGCTAGCAAGCAAGCGCAAAGAAATGGCGAGA
GAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGGCAAGTCAC
TTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGAGCTTTCTG
TTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCACAGGCAAG
CTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAAAAGCACCG
TGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGTTGAGTTGC
AGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAGCTGCCGAA
AAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCATGGATTAAG
TTTAGAAGAATTGCAGAGGCTTGAAAGGTCTCTTGAAGTTGGATTGGGAC
GAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTAATGAACTC
CCAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTAAGACAGCA
AGTGGCGGAGGTATCAAATGCATACGGTGAAGAAGGCCAGTCCTCAGAGT
CTGTTAATAATATATGCATTTCATCAACGCGCCTCCCCTGAATCT
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