DR908209

Overview
NameDR908209
Unique NameDR908209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 63/194 (32.47%), Postives = 103/194 (53.09%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLL-------RQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVSNAYGEEGQSSE 649
            M R KI+IK+I+N T+RQVTF KRR G+ KKA EL++LCDA++ALI+FS+ G+L+E+S+ +S +  +E+++  S +       S    +++ N++    +EAA+  H +       R + GE I                 G+ R+              + +R   L  EN  LR +VAE   A  ++ Q++E
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASAS------TSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQAAE 188          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.510e-20
Identity = 59/188 (31.38%), Postives = 93/188 (49.47%), Query Frame = 2
Query:   77 SKRKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVSNAYGEEGQ 640
            S ++++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VAL++FS  G+L+EY+++S+K  +E+++    +       S           S L  +     +  R M GE + G               G+ ++              + +R   L   N+ LR ++AE   A  +  Q
Sbjct:   12 SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQ 199          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 59/188 (31.38%), Postives = 94/188 (50.00%), Query Frame = 2
Query:   77 SKRKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVSNAYGEEGQ 640
            S ++++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VALI+FS+ G+L+EY+++S+K  +E+++    +       S           S L  +     +  R M GE +                 G+ ++              + +R   L   N+ LR ++AE   A  ++ Q
Sbjct:   12 SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQ 199          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 64/197 (32.49%), Postives = 100/197 (50.76%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVSNAYGEEGQSSESVNNICISST 679
            M R K+Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+VALIIFS  GKL++Y++ S M +ILE++  +S   + +     + Q    + Y  L  +        + + GE++                  L  +            NEL R+ K L EEN+ L++++ E      ++ Q  ++      SS+
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQVQWDQTQPQTSSSSS 197          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 62/177 (35.03%), Postives = 95/177 (53.67%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVD-QPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVS 616
            M R K+++K+I+N  +RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  G+LFE+S+SS M + LE++R  + NL   +   ++E +L     Y  L           R + GE++                + L  +             EL R+ + L + N+ L++++ E S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETS 177          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 62/177 (35.03%), Postives = 95/177 (53.67%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVD-QPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVS 616
            M R K+++K+I+N  +RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  G+LFE+S+SS M + LE++R  + NL   +   ++E +L     Y  L           R + GE++                + L  +             EL R+ + L + N+ L++++ E S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETS 177          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 62/185 (33.51%), Postives = 96/185 (51.89%), Query Frame = 2
Query:   77 SKRKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHR---VHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVSNA 622
            S ++++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VALI+FS  G+L+EY+++S+K  +E+++     S N   V + + +    E    S L +E +      R M GE +                 G+ R+              + ++   L   N+ LR ++AE   A
Sbjct:   12 SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQE---ASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERA 193          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 64/188 (34.04%), Postives = 100/188 (53.19%), Query Frame = 2
Query:   95 AREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHR-----------VHSKNLERVDQPSVELQL----LENNNYSMLFKEAAEKSHL-LRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAE 610
            +R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VAL++FS+ G+L+EYS++S+KE +E+++           V   N +   Q + +L+     L+N+N +++       +H  L+Q+ G                    GLG++              + RR   L  +N  L+ +VAE
Sbjct:   44 SRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGR----------------LDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAE 215          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 63/193 (32.64%), Postives = 100/193 (51.81%), Query Frame = 2
Query:   74 ASKRKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLE--NNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVSNAYGEEGQSS 646
            A   K++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VAL+IFS  G+L+EY+++S++  +E+++      + V+ PSV     +      S L ++  +  +  R + GE +                 G+ RV              + +R   L   N  LR ++AE +    ++ +SS
Sbjct:   10 AESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACS--DAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESS 200          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 54/122 (44.26%), Postives = 82/122 (67.21%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS--SSMKEILEKHRVHSKNL---ERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIH 442
            M R KI+IK+I+N+T RQVTFSKRR GI KKA E+SVLCDA+V ++IFS+ GKL++Y S  +S+  ILEK++ +S  +   E+    S E+  ++  N +M  +        LR ++GE+++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIE--------LRHLKGEDLN 114          
The following BLAST results are available for this feature:
BLAST of DR908209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MAD21_ORYSJ1.510e-2032.47MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AG_SOLLC1.510e-2031.38Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_TOBAC1.972e-2031.38Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
MAD14_ORYSI2.576e-2032.49MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MADS5_ORYSJ3.364e-2035.03MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI3.364e-2035.03MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AG_PANGI3.364e-2033.51Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
MAD58_ORYSJ4.394e-2034.04MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AGL1_ARATH4.394e-2032.64Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MADS2_ORYSJ5.738e-2044.26MADS-box transcription factor 2 OS=Oryza sativa su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16337 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908209 ID=DR908209; Name=DR908209; organism=Citrus sinensis; type=EST; length=695bp
CAATATACAAACTCGAGAGCTTTTTATTTCATATAGTTATTCTTTTTCAG
GAAGATCACAGCAGTAACAGCTAGCAAGCAAGCGCAAAGAAATGGCGAGA
GAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGGCAAGTCAC
TTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGAGCTTTCTG
TTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCACAGGCAAG
CTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAAAAGCACCG
TGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGTTGAGTTGC
AGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAGCTGCCGAA
AAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCATGGATTAAG
TTTAGAAGAATTGCAGAGGCTTGAAAGGTCTCTTGAAGTTGGATTGGGAC
GAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTAATGAACTC
CCAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTAAGACAGCA
AGTGGCGGAGGTATCAAATGCATACGGTGAAGAAGGCCAGTCCTCAGAGT
CTGTTAATAATATATGCATTTCATCAACGCGCCTCCCCTGAATCT
back to top