DR908209

Overview
NameDR908209
Unique NameDR908209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 65/184 (35.33%), Postives = 96/184 (52.17%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHR------VHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVSNA 622
            M R ++++K I+N   RQVTF+KRR+ + KKA ELSVLCDA+VALIIFS  GKL+E+ SS+SM + LEK++        S  + R  Q S +  L   N       EA ++S   R + GE++                  L ++             +L RR ++L E N+ L+++  E S A
Sbjct:    1 MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQKCNFGSPESTIISRETQSSQQEYLKLKNRV-----EALQRSQ--RNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQA 177          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKH 298
            M R ++++K+I+N   RQVTFSKRR G+ KKA ELSVLCDA+VALIIFS+ GKL+E+ S+ + + LEK+
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKY 69          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS--SMKEILEKH 298
            M R KI++K+I+N T+RQVTFSKRR G+ KK  ELSVLCDA + LIIFS+ GKLFEY S   SM +I+ ++
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRY 74          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 45/99 (45.45%), Postives = 74/99 (74.75%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKH-RVHSKNLERVDQPSVELQLLENNNYSML 382
            M R+K++IK+I+N ++RQVTFSKRR G+ +KA +LSVLCDA VAL++ SA+GKL+ +SS  ++ +IL+++ + H+ +L+ +D  S  L     ++Y +L
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDLKALDHQSKALNY--GSHYELL 97          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGE 433
            MAR KIQIK+I+N T RQVT+SKRR G+FKKA EL+VLCDA V++I+ S+TGKL E+ S S         + +K L  + Q +V + L  N++Y  + ++  +   + R +R E
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPS---------ITTKQLFDLYQKTVGVDLW-NSHYEKMQEQLRKLKEVNRNLRKE 104          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEI 439
            M R KI+IK+I+N++ RQVT+SKRR GI KKA+E+SVLCDA V++IIF+++GK+ E+ S S   +      H  + +R+  P  E     +N  + + KE       LR ++GE+I
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHL---DNEINRVKKENDSMQIELRHLKGEDI 113          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS--SSMKEILEKHR------VHSKNLERVDQPSVELQLLENN 367
            MAR KIQIK+I+N T RQVT+SKRR G+FKKA EL+VLCDA V++I+FS++ KL EY S  ++ KEI++ ++      V +   ER+ +   + +LLE N
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQE--TKRKLLETN 98          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 59/180 (32.78%), Postives = 90/180 (50.00%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHRVHSKNLERVDQPSVE----LQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEVS 616
            M R ++++K+I+    RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  GKL+E+ SSSSM + LE+++   K      +P++     L++     Y  L           R + GE++                + L ++             +  R+   L E N  L+Q++ E S
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ---KCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGS 177          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 64/189 (33.86%), Postives = 98/189 (51.85%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMK--EILEKH-RVHSKNL--ERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERL-----RQQVAEVSNAYG 628
            M R KI+IK+I+NA  R VTFSKRR G+ KKA+E++VLCDA VALIIF++ GK+ +Y   SM    +L+++ ++  K L   + +  S E+  ++  N S+  +        LR ++GE+I                 GL +V                R  K++ EE  +L     +Q++A  SNA G
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLE--------LRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILISKR----RNEKMMAEEQRQLTFQLQQQEMAIASNARG 177          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS--MKEILEKHRV---HSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHG 445
            M R KI+IK+I+NAT RQVT+SKRR GI KKA EL+VLCDA VA+I+FS+TGK  E+ S S  +K I ++++     S  +E+ +     L  L++ N ++  +        +RQ  GE++ G
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTE--------IRQRMGEDLDG 115          
The following BLAST results are available for this feature:
BLAST of DR908209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AGL9_ARADE3.481e-1735.33Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
MAD17_ORYSJ5.938e-1759.42MADS-box transcription factor 17 OS=Oryza sativa s... [more]
FBP24_PETHY5.938e-1760.56MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
FLC_ARATH1.013e-1645.45MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MADS1_PETHY1.323e-1644.74Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
GLOB_ANTMA2.257e-1642.24Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
AP3_ARATH2.947e-1650.00Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
AGL9_SOLLC3.849e-1632.78Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
PIST_ARATH5.027e-1633.86Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD16_ORYSJ5.027e-1643.09MADS-box transcription factor 16 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16337 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908209 ID=DR908209; Name=DR908209; organism=Citrus sinensis; type=EST; length=695bp
CAATATACAAACTCGAGAGCTTTTTATTTCATATAGTTATTCTTTTTCAG
GAAGATCACAGCAGTAACAGCTAGCAAGCAAGCGCAAAGAAATGGCGAGA
GAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGGCAAGTCAC
TTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGAGCTTTCTG
TTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCACAGGCAAG
CTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAAAAGCACCG
TGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGTTGAGTTGC
AGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAGCTGCCGAA
AAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCATGGATTAAG
TTTAGAAGAATTGCAGAGGCTTGAAAGGTCTCTTGAAGTTGGATTGGGAC
GAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTAATGAACTC
CCAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTAAGACAGCA
AGTGGCGGAGGTATCAAATGCATACGGTGAAGAAGGCCAGTCCTCAGAGT
CTGTTAATAATATATGCATTTCATCAACGCGCCTCCCCTGAATCT
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