DR908209

Overview
NameDR908209
Unique NameDR908209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS--SMKEILEKH 298
            M R KI++K+I+N T+RQVTFSKRR G+ KK  ELSVLCDA + LI+FS  GKL EY +   SMK+I++++
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRY 71          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKH 298
            M R ++++K+I+N   RQVTFSKRR G+ KKA ELSVLCDA+VALIIFS+ GKL+E+ S  ++  +E++
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERY 69          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVE-LQLLENNNYSMLFK-EAAEKSHLLRQMRGEEIHG 445
            M R K+++K+I+N   RQVTFSKR+ G+ KKA ELSVLCDA+V+LIIFS  GKL+E+S+  +   +E++     NL  +D  ++E  Q L      +  K E+  ++H  R + GE++ G
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYRCKDNL--LDNDTLEDTQGLRQEVTKLKCKYESLLRTH--RNLVGEDLEG 116          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMK--EILEKH-RVHSKNLERVDQPSVELQLL-----ENNNYSMLFKE 391
            M R ++++KKI+N T RQVTFSKRR G+ KKA EL++LCDA + +I+FS TGK++EYSS   +   I +++ +  S   E +D     +Q +     ENN   ++ ++
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQ 108          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS--SSMKEILEKHR 301
            MAR KIQIK+I+N T RQVT+SKRR G+FKKA ELSVLCDA V++I+ S+T KL EY S  ++ K++ ++++
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQ 72          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS--MKEILEKHRVHSKNL---ERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIH 442
            M R KI+IK+I+N++ RQVT+SKRR GI KKA+E++VLCDA V+LIIF  +GK+ EY S S  + ++L+ ++  S       + +  S E+  ++  N +M  K        LR ++GE+I+
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVK--------LRHLKGEDIN 114          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 37/71 (52.11%), Postives = 59/71 (83.10%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS-SMKEILEKHR 301
            MAR K+Q+++I+N   RQVTF KRR G+ KKA ELS+LC+AD+ +IIFSA GKL++ +++ +M+E++E+++
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK 71          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 37/71 (52.11%), Postives = 59/71 (83.10%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS-SMKEILEKHR 301
            MAR K+Q+++I+N   RQVTF KRR G+ KKA ELS+LC+AD+ +IIFSA GKL++ +++ +M+E++E+++
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK 71          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKS 406
            M R KI I+KI N   RQ TF+KR+ G+ KKA ELS+LCD ++A+I+FS+  KLF+YSS  M ++L ++  ++ N  +          L N +Y+ +F     K+
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRYTDNTDNTRK---------NLTNQDYNRVFGNKKSKN 98          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 57/179 (31.84%), Postives = 95/179 (53.07%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQP-SVELQLLENNNYSMLFKEAAEKSHLLRQMR---GEEIHGXXXXXXXXXXXXXXVGLGRVXXXXXXXXXXXXNELPRRGKLLMEENERLRQQVAEV 613
            M R K+ +++I+N  +RQVTF+KRR G+ KKA ELS+LCDA+VAL++FS  G+L+++SSSS M + LE+++ +    +    P S E+Q    NNY       A    L +  R   GE++                  L ++             +L R+ ++L + N  L++++ E+
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQ----NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEI 175          
The following BLAST results are available for this feature:
BLAST of DR908209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
DEF21_ANTMA5.027e-1657.75MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
AGL6_ARATH6.566e-1656.52Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AGL13_ARATH6.566e-1642.50Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
MAD31_ORYSJ8.575e-1640.74MADS-box transcription factor 31 OS=Oryza sativa s... [more]
DEFA_ANTMA1.463e-1558.33Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MADS2_PETHY1.910e-1540.98Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD26_ORYSJ1.910e-1552.11MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI1.910e-1552.11MADS-box transcription factor 26 OS=Oryza sativa s... [more]
SRFC_DICDI2.495e-1540.00Serum factor response C OS=Dictyostelium discoideu... [more]
MAD34_ORYSJ2.495e-1531.84MADS-box transcription factor 34 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16337 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908209 ID=DR908209; Name=DR908209; organism=Citrus sinensis; type=EST; length=695bp
CAATATACAAACTCGAGAGCTTTTTATTTCATATAGTTATTCTTTTTCAG
GAAGATCACAGCAGTAACAGCTAGCAAGCAAGCGCAAAGAAATGGCGAGA
GAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGGCAAGTCAC
TTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGAGCTTTCTG
TTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCACAGGCAAG
CTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAAAAGCACCG
TGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGTTGAGTTGC
AGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAGCTGCCGAA
AAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCATGGATTAAG
TTTAGAAGAATTGCAGAGGCTTGAAAGGTCTCTTGAAGTTGGATTGGGAC
GAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTAATGAACTC
CCAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTAAGACAGCA
AGTGGCGGAGGTATCAAATGCATACGGTGAAGAAGGCCAGTCCTCAGAGT
CTGTTAATAATATATGCATTTCATCAACGCGCCTCCCCTGAATCT
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