DR908209

Overview
NameDR908209
Unique NameDR908209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 39/84 (46.43%), Postives = 61/84 (72.62%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSV 343
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIFS++ KL++Y+S+ M  +L K+  +++  E +   ++
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKYTEYNEPHESLTNKNI 84          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 313
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 313
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 313
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 313
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 313
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 313
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD D+ALIIF++  +LF+Y+SS M  +L K+  +S+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSDMDRVLLKYTEYSE 74          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGE 433
            M R K++I+KI+N T RQVTFSKRR GI KKA+EL+VLCDA V+L++ S+T KL  Y S  +   L+K     + +E VD    + + ++  +  +L   +  +  + R+M G+
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVS--LKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGD 112          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 39/70 (55.71%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKH 298
            MAR KIQ+K+I+N   RQVTF KRR G+ KKA+ELSVLCDA++ ++IFS  GKLFE ++  +M+ +++K+
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKY 70          
BLAST of DR908209 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   92 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 313
            M R+KIQI++I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF+ + KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNE 74          
The following BLAST results are available for this feature:
BLAST of DR908209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MEF2_DROME3.259e-1546.43Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2C_PONAB4.256e-1552.70Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG4.256e-1552.70Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_MOUSE4.256e-1552.70Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN4.256e-1552.70Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN4.256e-1552.70Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2B_MOUSE5.558e-1554.05Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
CMB2_DIACA7.259e-1540.35MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AGL12_ARATH7.259e-1555.71Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MEF2D_XENLA9.481e-1551.35Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16337 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908209 ID=DR908209; Name=DR908209; organism=Citrus sinensis; type=EST; length=695bp
CAATATACAAACTCGAGAGCTTTTTATTTCATATAGTTATTCTTTTTCAG
GAAGATCACAGCAGTAACAGCTAGCAAGCAAGCGCAAAGAAATGGCGAGA
GAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGGCAAGTCAC
TTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGAGCTTTCTG
TTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCACAGGCAAG
CTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAAAAGCACCG
TGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGTTGAGTTGC
AGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAGCTGCCGAA
AAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCATGGATTAAG
TTTAGAAGAATTGCAGAGGCTTGAAAGGTCTCTTGAAGTTGGATTGGGAC
GAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTAATGAACTC
CCAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTAAGACAGCA
AGTGGCGGAGGTATCAAATGCATACGGTGAAGAAGGCCAGTCCTCAGAGT
CTGTTAATAATATATGCATTTCATCAACGCGCCTCCCCTGAATCT
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