DR908206

Overview
NameDR908206
Unique NameDR908206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 54/222 (24.32%), Postives = 103/222 (46.40%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKYT---RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGG-IQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDI 651
            DG G +WW +  K   +      P  + F+  +N+++S++ L N+   ++      N+    + + +P  SPNTDGI+     N  I+D  + +GDDC+++ SG           ++ +    +TC   +  +I +LG + S   + +V       I T +GVRIKT  G  G  K+I  + + M  +     +  +Y    +   + K+   +  + Y++I
Sbjct:  170 DGNGHIWWPKSCKINPQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSG-----------SENVRATGITCGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNI 380          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 54/199 (27.14%), Postives = 96/199 (48.24%), Query Frame = 1
Query:    4 GQGALWWQQFHKGKLKYTR--PYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVGRG-GYVKDIYVRGMTMHTMKWAFWMTGNYGS 585
            G+G   W+    GK       P  ++F    N++I+ ++ +N+ ++++  V + N+ +Q I + AP  SPNTDGI+  +  N  I D  I +GDDCV+V           G  +  + + R+ C   +  ++ +LG  +    +  +   +   I T++G+RIKT  G       DI    + M ++K    +  NYGS
Sbjct:  148 GKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSV-----------GRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGS 335          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 53/188 (28.19%), Postives = 93/188 (49.47%), Query Frame = 1
Query:    1 DGQGALWWQQ--FHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVG-RGGYVKDIYVRGMTMHTM 549
            DGQG++ +++      + +   P  I F +  N  I  +T  +S  ++++     NI ++ + I AP  SPNTDGI+        I    I +GDDC+++  G           TK +VI+ +TC   +  +I +LG  +    ++ ++  +    NT +G RIKT  G  GG V +I+   +TM+ +
Sbjct:  127 DGQGSIAYEKNTCENREFRSKLPVNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDG-----------TKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNV 303          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 53/188 (28.19%), Postives = 93/188 (49.47%), Query Frame = 1
Query:    1 DGQGALWWQQ--FHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVG-RGGYVKDIYVRGMTMHTM 549
            DGQG++ +++      + +   P  I F +  N  I  +T  +S  ++++     NI ++ + I AP  SPNTDGI+        I    I +GDDC+++  G           TK +VI+ +TC   +  +I +LG  +    ++ ++  +    NT +G RIKT  G  GG V +I+   +TM+ +
Sbjct:  127 DGQGSIAYEKNTCENREFRSKLPVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDG-----------TKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNV 303          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 50/168 (29.76%), Postives = 82/168 (48.81%), Query Frame = 1
Query:    1 DGQGALWWQ--QFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGG----IQDVRAEDIKAINTESGVRIKT 486
            DG+G   W+    HK       P  + F + DN +I  +T L++ +++ + +   N+    I IIAP  SPNTDGI+   C   +I +  I +GDDC++V  G            K L+I ++ C   +   I++GS    G    + D+  ++     T +G+RIKT
Sbjct:  116 DGEGNAAWKANNCHKTFECKKLPISVRFDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDG-----------MKNLLIEKVVCGPGHG--ISVGSLGRYGWEQDVTDITVKNCTLEGTSNGLRIKT 270          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 54/231 (23.38%), Postives = 101/231 (43.72%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKY---TRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMS-GGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAA 678
            +G G  WW    K K      + P  + F    N+ +S L++ +S   ++      +++   + + AP  SPNTDGI+        + +  I +GDDC++++SG           +K ++   +TC   +  +I +LG   S   +  V  +     +T +G+RIKT  G  G  K+I  + + MH +     +   Y    D   + ++   +  + Y +I   + S  A
Sbjct:  183 NGNGETWWDSSCKRKKSLPCKSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESG-----------SKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVA 402          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 59/221 (26.70%), Postives = 107/221 (48.42%), Query Frame = 1
Query:    1 DGQG-ALWWQQFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALG-SEMSGGIQDVRAEDIKAINTESGVRIKT-AVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDI 651
            D QG +LW  + + G    T    + F  ++NI+IS LT +NS  +++    S+N+ + G+ + A   SPNTDGI+ +S  +  I +  I +GDDC+++  G           +  + I+ + C   +  +I +LG +E   G+ +V   ++  + T +GVRIKT       + ++I  + + M  +K    +  +Y  H         + V   + Y DI
Sbjct:  132 DAQGTSLWKCKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPG-----------STNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLHKPCPKQESGVKV-SNVRYEDI 340          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 48/188 (25.53%), Postives = 88/188 (46.81%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKYT---RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMS-GGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTM 549
            +G G  WW++  K          P  + F    N+++ +L +++S   ++       + + G+ +IAP TSPNTDGI+        I++  + +GDDC+++              + Q+ I  + C   +  +I +LG   S   ++D+  +     +T +GVRIKT  G  G V  I  R + M+ +
Sbjct:  154 NGMGQEWWERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKN-----------STQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNV 330          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 53/177 (29.94%), Postives = 80/177 (45.20%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIAL--GSEMSGGIQDVRAEDIKAINTESGVRIKT-AVGRGGYVKDIY 522
            DGQ A  W+     K     P  + F    N  I  +T L+S S++V+     N+      + AP  SPNTDGI+    ++  I D    +GDDC++V           G  T+QL I R+TC   +  ++    G+     +  V   +    NT++GVRIKT      G V D++
Sbjct:  122 DGQAAAAWECKQSKKCNKL-PNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISV-----------GDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVH 286          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 64/230 (27.83%), Postives = 109/230 (47.39%), Query Frame = 1
Query:    1 DGQG-ALWWQQFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEM-SGGIQDVRAEDIKAINTESGVRIKTAVGR--GGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHY--DPKALP-VIQGINYRDIVADNV 666
            DGQG ALW  +   G+   +    + F  ++NI +S L  LNS  +++      N+ +QG+ +     SPNTDGI+    +   I +  I +GDDCV++  G           T  L I  + C   +  +I +LG E    G+Q+V  + +    T++G+RIK + GR   G+ ++I  +  TM  ++    +        D HY  D K  P  + G+   D+  +++
Sbjct:  126 DGQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPG-----------TSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIK-SWGRPSTGFARNILFQHATMVNVENPIVI--------DQHYCPDNKGCPGQVSGVQISDVTYEDI 335          
The following BLAST results are available for this feature:
BLAST of DR908206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
QRT2_ARATH1.048e-1324.32Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=... [more]
PGLR1_ARATH1.369e-1327.14Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR_GOSBA3.050e-1328.19Polygalacturonase OS=Gossypium barbadense GN=G9 PE... [more]
PGLR_GOSHI3.983e-1328.19Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2... [more]
PGLR_BRANA5.202e-1329.76Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR_PERAE8.874e-1323.38Polygalacturonase OS=Persea americana PE=2 SV=1[more]
PGLR6_ARATH8.874e-1326.70Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]
PGLR5_ARATH1.977e-1225.53Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
PGLR_TOBAC4.404e-1229.94Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2... [more]
PGLR_PRUPE7.512e-1227.83Polygalacturonase OS=Prunus persica PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16334 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908206 ID=DR908206; Name=DR908206; organism=Citrus sinensis; type=EST; length=695bp
GACGGTCAGGGTGCACTTTGGTGGCAGCAATTCCACAAGGGCAAGCTAAA
ATACACTCGGCCTTACCTGATTGAATTCATGTACACTGACAATATCCAAA
TCTCAAGTCTAACGCTGCTGAATTCACCATCATGGAATGTTCATCCTGTT
TACAGCAGTAATATTCTCGTGCAAGGGATTACCATCATTGCCCCTGTTAC
ATCTCCAAACACAGATGGAATCAACCCAGATTCTTGCACCAATACTAGAA
TTGAAGACTGCTACATAGTCTCTGGAGATGATTGTGTGGCAGTAAAAAGC
GGATGGGACGAGTATGGAATTGCATATGGAATGCCCACAAAACAACTAGT
CATCAGACGGCTGACATGCATTTCACCGTACAGTGCCACCATCGCATTAG
GCAGCGAGATGTCAGGTGGGATTCAAGACGTCAGAGCTGAAGACATCAAA
GCCATCAATACTGAATCTGGAGTTAGAATCAAAACTGCCGTAGGCAGAGG
AGGGTATGTTAAAGACATTTACGTAAGAGGAATGACCATGCACACAATGA
AATGGGCCTTTTGGATGACTGGCAATTATGGATCGCATGCCGATAATCAC
TATGATCCAAAGGCTCTGCCCGTGATTCAAGGAATTAATTATAGGGACAT
TGTGGCGGATAATGTGTCCATGGCTGCTAGATTAGAGGGAATTTC
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