DR908206

Overview
NameDR908206
Unique NameDR908206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 54/228 (23.68%), Postives = 105/228 (46.05%), Query Frame = 1
Query:    1 DGQGALWWQ---QFHKG------KLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGG-IQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDI 651
            +G G  WW    + H+G            P +I F  ++NI++  L + NSP +++       +L+  I I +P  SPNTDGI+  +  +  I +  + +GDDC+++ +G  +           + I+ +TC   +  +I +LG   S   + ++   +    ++++G+R+KT  G  G V ++    + M  +     +   Y    D   +  A+ V   + YR+I
Sbjct:  181 EGNGQKWWDLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSD-----------VDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAVKVFD-VEYRNI 396          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_MALDO (Polygalacturonase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 59/234 (25.21%), Postives = 108/234 (46.15%), Query Frame = 1
Query:    1 DGQGALWWQQFHKGKLKYT----RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQG--ITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQD----VRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSH-ADNHYDPKALPVIQGINYRDIVADNVS 669
            +G G +WW+   K K +       P  + F   +N+ + +L + ++    +H ++ + I VQ   +T+ AP  SPNTDGI+  +  N  I    I +GDDC+++ SG           ++++    +TC   +   I++GS    G +D    V     K   T +G+RIKT  G  G   +I  + + M+ +     +  NY  H   +    K+   ++ + Y++I   + S
Sbjct:  196 NGNGNIWWKNSCKIKPQPPCGTYAPTAVTFNRCNNLVVKNLNIQDAQQ--IHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSG-----------SQRVQATDITCGPGHG--ISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTWKGGSGSATNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNIRGTSAS 414          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_YEAST (Polygalacturonase OS=Saccharomyces cerevisiae GN=PGU1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 60/240 (25.00%), Postives = 104/240 (43.33%), Query Frame = 1
Query:    1 DGQGALWWQQF-HKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYS----SNILVQGITIIA----PVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDI-YVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLE 687
            DGQGA WW      GK+K   P  ++   T   +++ L + N+P    H V+S    S++ +  ITI           NTDG +  S +N  I+ C + + DDC+AV SG              +      C + +  ++ ++G      +    AE+   IN+++G+RIKT  G  G V ++ ++         +   + G+Y +          +P I  +  +DI     S A R++
Sbjct:  106 DGQGAKWWDGLGDSGKVK---PKFVKLALTGTSKVTGLNIKNAP----HQVFSINKCSDLTISDITIDIRDGDSAGGHNTDGFDVGSSSNVLIQGCTVYNQDDCIAVNSG------------STIKFMNNYCYNGHGISVGSVGGRSDNTVNGFWAENNHVINSDNGLRIKTVEGATGTVTNVNFISNKISGIKSYGIVIEGDYLNSKTTGTATGGVP-ISNLVMKDITGSVNSTAKRVK 325          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR2_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=pehA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 60/193 (31.09%), Postives = 88/193 (45.60%), Query Frame = 1
Query:    1 DGQGAL--------WWQQFHKGK---LKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSN--ILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTM 540
            DGQG +        WW+     K   LK   P LI+   + N  + +++L+NSP  N H V+S          TI  P T+ NTDGI+P S  N  I    I +GDD VA+K        AY    +   I  L         +++GSE + G+ +V  +D+K   T +G+RIK+     G V  +    + M
Sbjct:  146 DGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIK--------AYKGRAETRNISILHNDFGTGHGMSIGSE-TMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVM 327          
BLAST of DR908206 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 54/194 (27.84%), Postives = 95/194 (48.97%), Query Frame = 1
Query:    1 DGQGALWWQQFH-----KGKLKYTRPYL-IEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGS-EMSGGIQDVRAEDIKAINTESGVRIKTAVGRGG--YVKDIYVRGMTMHTMK 552
            DGQGA  +++        GK   ++ ++   F + +N  +  +T  +S +++V      NI   G TI AP  SPNTDGI+    T+ +I +  I +GDDCV++  G           +KQ+ ++ + C   +  ++ +LG       ++ +  ++     T++GVRIKT     G   V DI+   +TM  +K
Sbjct:  121 DGQGATVYKKAAPASAWSGKNSNSKVFMNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDG-----------SKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVK 303          
The following BLAST results are available for this feature:
BLAST of DR908206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PGLR4_ARATH7.512e-1223.68Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLR_MALDO9.811e-1225.21Polygalacturonase OS=Malus domestica PE=2 SV=1[more]
PGLR_YEAST2.186e-1125.00Polygalacturonase OS=Saccharomyces cerevisiae GN=P... [more]
PGLR2_PECCC2.855e-1131.09Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR_MEDSA3.728e-1127.84Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16334 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908206 ID=DR908206; Name=DR908206; organism=Citrus sinensis; type=EST; length=695bp
GACGGTCAGGGTGCACTTTGGTGGCAGCAATTCCACAAGGGCAAGCTAAA
ATACACTCGGCCTTACCTGATTGAATTCATGTACACTGACAATATCCAAA
TCTCAAGTCTAACGCTGCTGAATTCACCATCATGGAATGTTCATCCTGTT
TACAGCAGTAATATTCTCGTGCAAGGGATTACCATCATTGCCCCTGTTAC
ATCTCCAAACACAGATGGAATCAACCCAGATTCTTGCACCAATACTAGAA
TTGAAGACTGCTACATAGTCTCTGGAGATGATTGTGTGGCAGTAAAAAGC
GGATGGGACGAGTATGGAATTGCATATGGAATGCCCACAAAACAACTAGT
CATCAGACGGCTGACATGCATTTCACCGTACAGTGCCACCATCGCATTAG
GCAGCGAGATGTCAGGTGGGATTCAAGACGTCAGAGCTGAAGACATCAAA
GCCATCAATACTGAATCTGGAGTTAGAATCAAAACTGCCGTAGGCAGAGG
AGGGTATGTTAAAGACATTTACGTAAGAGGAATGACCATGCACACAATGA
AATGGGCCTTTTGGATGACTGGCAATTATGGATCGCATGCCGATAATCAC
TATGATCCAAAGGCTCTGCCCGTGATTCAAGGAATTAATTATAGGGACAT
TGTGGCGGATAATGTGTCCATGGCTGCTAGATTAGAGGGAATTTC
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