DR908175 | Citrus Genome Database

Overview


Name	DR908175
Unique Name	DR908175
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	703

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 1433B_MOUSE (14-3-3 protein beta/alpha OS=Mus musculus GN=Ywhab PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 2

Query:    5 TGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 328
            +G+ ++     S +AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+NSPE+AC LAK AFDEAI+ELDTL+EESYKDSTLIMQLLRDNLTLWTS+   D GD  +
Sbjct:  136 SGENKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGE 243

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 14331_CAEEL (14-3-3-like protein 1 OS=Caenorhabditis elegans GN=par-5 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 2

Query:   11 DERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDI-----PEDGGDEA 325
            ++R  V + S KAYQ A   A+ ++ PTHPIRLGLALNFSVFYYEI+N+PE AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD+      ++G  EA
Sbjct:  137 EDRAAVVEKSQKAYQEALDIAKDKMQPTHPIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDVGAEDQEQEGNQEA 246

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 1433T_XENLA (14-3-3 protein theta OS=Xenopus laevis GN=ywhaq PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = 2

Query:    8 GDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 328
            GD+RK   + S  AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+N+PE AC LAK AFDEAI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   +  D A+
Sbjct:  135 GDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAAE 241

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 1433T_RAT (14-3-3 protein theta OS=Rattus norvegicus GN=Ywhaq PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = 2

Query:    8 GDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 328
            GD+RK   + S  AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+N+PE AC LAK AFDEAI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   +  D A+
Sbjct:  135 GDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAAE 241

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 1433T_RABIT (14-3-3 protein theta OS=Oryctolagus cuniculus GN=YWHAQ PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = 2

Query:    8 GDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 328
            GD+RK   + S  AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+N+PE AC LAK AFDEAI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   +  D A+
Sbjct:  135 GDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAAE 241

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 1433T_MOUSE (14-3-3 protein theta OS=Mus musculus GN=Ywhaq PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = 2

Query:    8 GDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 328
            GD+RK   + S  AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+N+PE AC LAK AFDEAI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   +  D A+
Sbjct:  135 GDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAAE 241

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 1433T_CHICK (14-3-3 protein theta OS=Gallus gallus GN=YWHAQ PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.907e-35
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = 2

Query:    8 GDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEAQ 328
            GD+RK   + S  AYQ A   ++ E+ PTHPIRLGLALNFSVFYYEI+N+PE AC LAK AFDEAI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   +  D A+
Sbjct:  135 GDDRKQTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAAE 241

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 143B2_DANRE (14-3-3 protein beta/alpha-2 OS=Danio rerio GN=ywhab2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.958e-35
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 2

Query:    5 TGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGGDEA 325
            +GD +    + S KAYQ A   ++ ++ PTHPIRLGLALNFSVFYYEI+NSPE AC LAK AFDEAI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTS   E+ G+EA
Sbjct:  134 SGDSKATTVENSQKAYQDAFDISKKDMQPTHPIRLGLALNFSVFYYEILNSPENACQLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTS---ENQGEEA 237

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 1433_FUCVE (14-3-3-like protein OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.958e-35
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 2

Query:    2 KTGDERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTL-IMQLLRDNLTLWTSD 298
            ++ DERK  A  ++ AYQ AS  A  +L PTHPIRLGLALNFSVFYYEI+NSP+RAC LAK AFD+AI+ELDTLSEESYKDSTL IMQLLRDNLTLWTSD
Sbjct:  133 QSADERKTSASDALDAYQLASDHANQDLPPTHPIRLGLALNFSVFYYEILNSPDRACGLAKAAFDDAIAELDTLSEESYKDSTLIIMQLLRDNLTLWTSD 232

[Close]

BLAST of DR908175 vs. ExPASy Swiss-Prot
Match: 14332_ENTHI (14-3-3 protein 2 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.214e-34
Identity = 72/100 (72.00%), Postives = 86/100 (86.00%), Query Frame = 2

Query:   11 DERKDVADLSMKAYQAASTTAEAELSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPED 310
            ++RK+VAD S+ AYQ A+ TA A L PTHPIRLGLALNFSVFYY+IMN  ++AC LAK+AFDEAI +LD + EESYK+STLIMQLLRDNLTLWTSD+ +D
Sbjct:  139 EKRKEVADKSLAAYQEATDTA-ASLVPTHPIRLGLALNFSVFYYQIMNDADKACQLAKEAFDEAIQKLDEVPEESYKESTLIMQLLRDNLTLWTSDMGDD 237

The following BLAST results are available for this feature:

BLAST of DR908175 vs. ExPASy Swiss-Prot

BLAST of DR908175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143


Match Name	E-value	Identity	Description
1433B_MOUSE	9.991e-36	67.59	14-3-3 protein beta/alpha OS=Mus musculus GN=Ywhab...	[more]
14331_CAEEL	1.704e-35	67.27	14-3-3-like protein 1 OS=Caenorhabditis elegans GN...	[more]
1433T_XENLA	2.907e-35	69.16	14-3-3 protein theta OS=Xenopus laevis GN=ywhaq PE...	[more]
1433T_RAT	2.907e-35	69.16	14-3-3 protein theta OS=Rattus norvegicus GN=Ywhaq...	[more]
1433T_RABIT	2.907e-35	69.16	14-3-3 protein theta OS=Oryctolagus cuniculus GN=Y...	[more]
1433T_MOUSE	2.907e-35	69.16	14-3-3 protein theta OS=Mus musculus GN=Ywhaq PE=1...	[more]
1433T_CHICK	2.907e-35	69.16	14-3-3 protein theta OS=Gallus gallus GN=YWHAQ PE=...	[more]
143B2_DANRE	4.958e-35	69.16	14-3-3 protein beta/alpha-2 OS=Danio rerio GN=ywha...	[more]
1433_FUCVE	4.958e-35	76.00	14-3-3-like protein OS=Fucus vesiculosus PE=2 SV=1	[more]
14332_ENTHI	3.214e-34	72.00	14-3-3 protein 2 OS=Entamoeba histolytica PE=3 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_16303 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_D08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908175 ID=DR908175; Name=DR908175; organism=Citrus sinensis; type=EST; length=703bp
TAAGACTGGTGATGAGAGGAAAGATGTTGCTGATCTGTCAATGAAAGCCT
ATCAGGCAGCTTCTACTACCGCAGAAGCTGAATTGTCTCCTACCCACCCC
ATCCGACTTGGTTTGGCCTTGAACTTCTCAGTTTTTTACTATGAGATTAT
GAACTCTCCTGAAAGGGCATGCCACCTTGCAAAGCAGGCCTTTGATGAAG
CCATCTCAGAATTGGATACATTAAGTGAGGAATCTTACAAAGACAGCACG
TTGATAATGCAGCTATTGAGGGACAACCTCACTCTTTGGACTTCTGACAT
ACCAGAGGATGGAGGTGATGAAGCCCAGAAAATGGACATCTCTGCTAAAG
ATGGTGAAGGTGAAGATTGAAGAAGCAGAGGTGGGTTTGTTTTCCTATTT
TGGAGCACAGTTGCAATCTTTGTTGTTTTCTGTCCTCAGTGAACCAGCCA
GGAGCTTGGGAGCTCTAGCATATGATAGCAAGGAAGCTGCAATACCTTTA
TGACTCCCGGTGTTTTTCTTAGTTTACAAGAGACACTCAAGTACTGTTAT
TGTGCTGTTCCTATAATGTGGGTGTTATCTTCACTGTCAAGAGTTTCATG
ATTGGACTGCTTGTATCATTTGCATCCCAGAATCTTTTATATCTGCTGCC
GCTGATCAATTTGGACTTGGTGTTAAGACCACTTTGCACTTTAAAAAAAA
AAA