DR908168

Overview
NameDR908168
Unique NameDR908168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 57/155 (36.77%), Postives = 92/155 (59.35%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 461
            K+ LP EL+F ++YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + +K+      T++++++ L   GW VPAY +PA+  +  + R V R D   ++ E   +   + +  +E
Sbjct:  294 KEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIHNLE 448          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470
            ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470
            ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470
            ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470
            ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470
            ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470
            ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470
            ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 60/161 (37.27%), Postives = 93/161 (57.76%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470
            ++ LP ELVF+++YLG    TF +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LK+     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 58/161 (36.02%), Postives = 92/161 (57.14%), Query Frame = 3
Query:    3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAF----SLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470
            K DL  +LVF++NYLG +  TF+LNFS+   QIIAQYY F+R G  GY  I + C      + + L+K G F+++    G +P V +    +L       ++++SE LR  GW V +Y++P++  +V V RVV+R  FSR L    +  ++  ++  +  P
Sbjct:  288 KKDLHKDLVFNVNYLGGNMSTFSLNFSRPGGQIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKKMGIFDLIYDGTGALPGVCWTISKNLPSEPLFNLYDLSEKLRSRGWQVASYSLPSSMNDVVVSRVVIRHGFSRDLSSLFVKDVQNAIEYFQKHP 448          
The following BLAST results are available for this feature:
BLAST of DR908168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEC_LISMO8.477e-2736.77Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_SHIFL4.207e-2637.89Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI4.207e-2637.89Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECOL64.207e-2637.89Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEB_ECO574.207e-2637.89Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL4.207e-2637.89Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI4.207e-2637.89Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL64.207e-2637.89Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO571.224e-2537.27Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
GADB_DICDI3.334e-2336.02Glutamate decarboxylase B OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16296 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908168 ID=DR908168; Name=DR908168; organism=Citrus sinensis; type=EST; length=705bp
CCAAAGATGACTTGCCGGATGAACTTGTCTTTCACATCAACTACCTTGGA
TCTGATCAACCGACTTTCACCCTCAACTTCTCAAAAGGCTCCAGTCAAAT
AATTGCTCAATATTATCAGTTTATACGGCTTGGCTTTGAGGGTTACAAGA
ACATTATGGAAAATTGCATGGGGAATGCTAGAGCGCTAAGAGAAGGATTA
GAGAAAACAGGGCGCTTTGAAATTCTCTCCAAGGATGTTGGCGTACCCTT
AGTAGCCTTTTCTTTGAAGGACAGCAGCGCACACACCGTGTTTGAGATAT
CCGAGGGTTTGAGAAAGTTTGGGTGGATAGTTCCGGCCTATACAATGCCT
GCTAATGCTGAAAATGTGGCGGTTCTTCGGGTGGTTGTCAGGGAGGATTT
CAGCCGTAGCTTGGTGGAAAGACTCATCTCACACATCGAGGAAGTTTTGA
AGGAAATTGAATCGCTTCCAAGTCGTGTATCCACAAAAACTGCCCATGTC
ATACCCATGGTCAACGAAACTCAGGGTGATAAGCCACTTAAGAAGAGTGT
GAGGGAGACTCAGGAGGAAGTCACCAGGCACTGGAAGAGGTTCGTGAAAG
GCCGGAGAGCTGGAGCATGCTGAGGTTCCAACATAAGATGAGACAAGATT
TGTATGCTTGTTTGAATATTAAAGCTATTGCTTCTTCCTGTTTTCTGTAT
ATTCG
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