DR908168
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27 Identity = 57/155 (36.77%), Postives = 92/155 (59.35%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 461 K+ LP EL+F ++YLG PT +NFS+ +SQII QYY F+R GFEGY+ I E A L + +EK+G FEI++ +P+V + +K+ T++++++ L GW VPAY +PA+ + + R V R D ++ E + + + +E Sbjct: 294 KEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIHNLE 448
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26 Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470 ++ LP ELVF+++YLG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26 Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470 ++ LP ELVF+++YLG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26 Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470 ++ LP ELVF+++YLG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26 Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470 ++ LP ELVF+++YLG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26 Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470 ++ LP ELVF+++YLG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26 Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470 ++ LP ELVF+++YLG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26 Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470 ++ LP ELVF+++YLG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25 Identity = 60/161 (37.27%), Postives = 93/161 (57.76%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL---SKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470 ++ LP ELVF+++YLG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LK+ +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 292 EEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of DR908168 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23 Identity = 58/161 (36.02%), Postives = 92/161 (57.14%), Query Frame = 3 Query: 3 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAF----SLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 470 K DL +LVF++NYLG + TF+LNFS+ QIIAQYY F+R G GY I + C + + L+K G F+++ G +P V + +L ++++SE LR GW V +Y++P++ +V V RVV+R FSR L + ++ ++ + P Sbjct: 288 KKDLHKDLVFNVNYLGGNMSTFSLNFSRPGGQIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKKMGIFDLIYDGTGALPGVCWTISKNLPSEPLFNLYDLSEKLRSRGWQVASYSLPSSMNDVVVSRVVIRHGFSRDLSSLFVKDVQNAIEYFQKHP 448 The following BLAST results are available for this feature:
BLAST of DR908168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >DR908168 ID=DR908168; Name=DR908168; organism=Citrus sinensis; type=EST; length=705bpback to top |