DR908162

Overview
NameDR908162
Unique NameDR908162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.055e-65
Identity = 132/246 (53.66%), Postives = 162/246 (65.85%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN----RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP-------PAEHKRYNLKKLTYEE 705
            KNKYN PKYR VVRFTN+DI  QI+S+ I GD V ASAY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D  ++G  EA GE    E  E     RRPF+A LDVGL +T+TG RVF            IPHSE RF G+  +S++LDAE  +KYI+ GHVA YM TL +D+ E+Y+S F  YI+  +EAD LE+LY + HAAIR DP +K   + P        AE  +Y   KLT E+
Sbjct:   41 KNKYNAPKYRLVVRFTNRDIILQIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDDEERYKSQFNRYIEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLTREQ 286          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.033e-64
Identity = 123/233 (52.79%), Postives = 161/233 (69.10%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLT 696
            KNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAH+LP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P  +K  KK   + KR+N  K++
Sbjct:   41 KNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHKLPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKK-EVKKKRWNRPKMS 272          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.033e-64
Identity = 123/233 (52.79%), Postives = 160/233 (68.67%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLT 696
            KNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  I  D +EE+YKK HAAIR +P  +K  K+   + KR N  K++
Sbjct:   41 KNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKR-EVKKKRVNSTKMS 272          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_BOVIN (60S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=2 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.349e-64
Identity = 123/233 (52.79%), Postives = 160/233 (68.67%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLT 696
            KNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+  AEVHRK+I   +VA YMR L+E++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P  +K  KK   + KR+N  K++
Sbjct:   41 KNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLIEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKK-EVKKKRWNRPKMS 272          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_RAT (60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 3.005e-64
Identity = 122/233 (52.36%), Postives = 160/233 (68.67%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLT 696
            KNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G++Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P  +K  K+   + KR+N  K++
Sbjct:   41 KNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKR-EVKKKRWNRPKMS 272          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 8.743e-64
Identity = 122/233 (52.36%), Postives = 159/233 (68.24%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLT 696
            KNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G +Y+VE  + +   F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P  +K  K+   + KR+N  K++
Sbjct:   41 KNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKR-EVKKKRWNRPKMS 272          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 5.667e-63
Identity = 117/227 (51.54%), Postives = 157/227 (69.16%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRY 678
            KNKYNTPK+R +VR +N+DIT QI  A I GD ++ +AY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP  E    FR  LDVGL +TTTG RVF            IPHS KRF G+S ++K  +AE+HR +I+  HVA YMRTL E++ E ++  F +YI  GI+AD++E +YK  HA+IR  P+++   ++ P    R+
Sbjct:   41 KNKYNTPKFRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRIPPSRRNPRRRSPRSGGRW 267          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.266e-62
Identity = 121/236 (51.27%), Postives = 157/236 (66.53%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGED-YSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYNTPKYR VVR TNKDI AQI  A + GD+++ SAYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D+ YEG +E  G++ Y       +  FR  LD GL +T+TG R+F            IPHS KRF GF+ D K L+AE H+ +I+ GHV  YM  L E+  E Y+  F  +IK GI ++N+EE+YKK HAAIRADP+ K   +K   + KR+N  K++Y +
Sbjct:   51 KNKYNTPKYRLVVRVTNKDIIAQIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKLEEENEEAYKRQFSRFIKNGINSENIEEMYKKAHAAIRADPSPKAKVEK-TVDKKRWNRAKISYAQ 283          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 5.304e-61
Identity = 123/241 (51.04%), Postives = 160/241 (66.39%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKK-----PPAEHKRYNLKKLTYEE 705
            K KYNTPKYR VVRFTNKDI  QIIS++I GD+VLA+AY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D  Y+G  E  GE    E  E+  RPF+  LD+GL +TTTG RVF            +PHSE RF G+  +++++D E+ R YI+ GHV+ YM  L +D+ E++   F  Y+   I+AD+LE++Y   H AIRADP  K +EKK       AE K+Y   KL+ EE
Sbjct:   41 KAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEE 281          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.106e-58
Identity = 120/236 (50.85%), Postives = 159/236 (67.37%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSK---QLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLT 696
            KNKY++PKYR VVR TNK +  QI+S+++ GD V ASA + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++PEKY+  F  Y+K G+++++LE++Y K H  IR +P    ++ K   +H R   K LT
Sbjct:   41 KNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEEDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGSYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKRQFSAYLKLGLDSESLEDMYAKAHENIRKNP-VLPTKPKRKLKHVREGSKVLT 275          
The following BLAST results are available for this feature:
BLAST of DR908162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RL5_NEUCR6.055e-6553.6660S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_MACFA1.033e-6452.7960S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_CHICK1.033e-6452.7960S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]
RL5_BOVIN1.349e-6452.7960S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=... [more]
RL5_RAT3.005e-6452.3660S ribosomal protein L5 OS=Rattus norvegicus GN=R... [more]
RL5_MOUSE8.743e-6452.3660S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]
RL5_ANOGA5.667e-6351.5460S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_OIKDI6.266e-6251.2760S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_YEAST5.304e-6151.0460S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_THEPA1.106e-5850.8560S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16290 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908162 ID=DR908162; Name=DR908162; organism=Citrus sinensis; type=EST; length=706bp
AAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAA
CAAAGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAG
TCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTG
GGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCG
CCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTG
AGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCT
TTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCG
TGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTC
ACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGAC
GCTGAAGTTCACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACAT
GAGGACTTTGATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTG
AATACATCAAGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAG
AAGGTACATGCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAA
GAAGCCTCCAGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACG
AGGAAA
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