DR908162

Overview
NameDR908162
Unique NameDR908162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.218e-58
Identity = 119/236 (50.42%), Postives = 158/236 (66.95%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLT 696
            KNKY++PKYR VVR TNK +  QI+S+++ GD V ASA + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D+++ G VEA GE Y VE  +N RRPF+ALLDVG+   TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++PEKY+  F  Y+K G+++++LE++Y   H  IR +P    ++ K   +H R   K LT
Sbjct:   41 KNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKKQFSAYLKLGLDSESLEDMYASAHENIRKNP-VLPTKPKRKLKHVREGSKVLT 275          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.558e-57
Identity = 118/239 (49.37%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP---PAEHKRYNLKKLTYEE 705
            KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++Y + +A IR DP+ +KS K      AE  +Y  +KLT EE
Sbjct:   41 KNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEE 279          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.352e-56
Identity = 117/239 (48.95%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP---PAEHKRYNLKKLTYEE 705
            KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE    E  E+  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++Y + +A IR DP+ +KS K      AE  ++  +KLT EE
Sbjct:   41 KNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEE 279          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.710e-56
Identity = 108/236 (45.76%), Postives = 154/236 (65.25%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            KNKYN+PKYR V R TN D+ AQ++ + I GD VL +AYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++   Y+G  +  G+ + V+P +++ RPF+A LDVGL +T+TG +VF            +PH E RFAG++ +SK+L+AE  R YI+  HVA+YM  L  ++ + Y+  F +YIK G+   ++E +Y   H AIRA+P       K   + K  NL K T ++
Sbjct:   41 KNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIYANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQ 276          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.145e-55
Identity = 111/223 (49.78%), Postives = 150/223 (67.26%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEP-TENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLD----AEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKK 654
            KNKYN PKYRFVVR TN  +  Q++ A++ GD ++ SA + EL RYG++VGLTNY+AAY TGLLLARR+LK   +  E++G  + +GE+Y +E  +E RRPF+ +LDVG+V TT GNRVF            IPHS KRF GF+K     D     EVHR  IY  HVA YMRTL E++PE+YQ+ F  YI+  I+ D++E++Y++    IRA+P+  K E +
Sbjct:   41 KNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEEDPERYQAQFSAYIRNKIDPDSIEKMYEEAFQKIRANPDPVKKEAR 263          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.241e-38
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 1
Query:  427 SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEE 705
            SKDSKQLDAEVHRKYIY GHVAAYM  LMEDEPEKYQSHF  YIK  +  DN+EE+YKKVHAAIR DP+ KKS+K+PP  HKRYNLKKLTYEE
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEE 94          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 KNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVE 252
            KNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:   41 KNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 67/196 (34.18%), Postives = 91/196 (46.43%), Query Frame = 1
Query:   22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKV 606
            K RFVVR TN+ I  Q+I A   GD+ +A+A++ EL  +YG   G  N  AAY TGLL A R LK               G  Y            A+LD+GL + T G RVF            IPHSE           ++  E +R  I   H+A Y   L E  PE Y+  F  Y+ RG+  ++L + +++V
Sbjct:   32 KPRFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK--------------AGITY------------AVLDIGLHRPTRGARVFAALKGALDAGLEIPHSE-----------EVLPEEYR--IRGEHIAKYAAMLKEQNPELYEKRFSLYLARGLNPEDLPQHFEEV 188          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 58/200 (29.00%), Postives = 86/200 (43.00%), Query Frame = 1
Query:   22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIR 621
            K R VVR TNK I AQI+ A   GD  +A A    L ++G      N +AAY  GL++             Y+  +    E              A+LD+GL + T G RVF            IPH E+      +             I   H+A Y   L E+ P+ Y++ F  Y++RG+E + L + +++V  AI+
Sbjct:   32 KPRLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDER-------------IRGEHIAEYAAKLKEENPDAYKARFSRYLQRGLEPERLPDHFEEVRKAIQ 192          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 57/199 (28.64%), Postives = 85/199 (42.71%), Query Frame = 1
Query:   22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 606
            K R VVR TNK I AQ++ A   GD+ +       L ++G      N +AAY  GL+            A Y+  +    E              A+LD+GL +   G+RVF            IPH E+      + S +             HVA Y   L E+ PE Y++ F  Y++RG++ ++L    EE+ KK+
Sbjct:   32 KPRLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLV------------AGYKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEVLPEDDRVSGK-------------HVAEYAAKLKEENPELYKARFSRYLQRGVQPEDLPKHFEEVKKKI 191          
The following BLAST results are available for this feature:
BLAST of DR908162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RL5_THEAN3.218e-5850.4260S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5B_SCHPO3.558e-5749.3760S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO1.352e-5648.9560S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_DICDI6.710e-5645.7660S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_EIMTE1.145e-5549.7860S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_SOLME8.241e-3879.5760S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_PIG3.248e-2666.6760S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL18_HYPBU6.788e-1634.1850S ribosomal protein L18P OS=Hyperthermus butylic... [more]
RL18_PYRAR8.298e-1429.0050S ribosomal protein L18P OS=Pyrobaculum arsenati... [more]
RL18_THENV4.118e-1328.6450S ribosomal protein L18P OS=Thermoproteus neutro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16290 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908162 ID=DR908162; Name=DR908162; organism=Citrus sinensis; type=EST; length=706bp
AAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAA
CAAAGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAG
TCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTG
GGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCG
CCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTG
AGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCT
TTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCG
TGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTC
ACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGAC
GCTGAAGTTCACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACAT
GAGGACTTTGATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTG
AATACATCAAGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAG
AAGGTACATGCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAA
GAAGCCTCCAGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACG
AGGAAA
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