DR908162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 58/200 (29.00%), Postives = 84/200 (42.00%), Query Frame = 1 Query: 22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 618 K R VR +N+ + Q + A I GD V+A+A++ EL ++G + N AAY TG L R L+ + A+LDVGL K G+RVF IPHSE+ G + + C H+A + L E+ E YQ F Y+ RG+ + L ++V AI Sbjct: 32 KPRMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPGDER-------------VRCEHIAQWAEALKEENAELYQRQFSRYLDRGLNPEELPGHVEEVKKAI 192
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13 Identity = 56/197 (28.43%), Postives = 84/197 (42.64%), Query Frame = 1 Query: 28 RFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 618 R V R + +I AQI+ GD ++ SA++ E+ + G + N AAY TGLLL ++ LK EG+ E A+LD+GL T G V IPHSE+ G + I HV Y L ++ EKY F +Y+K G+ ++L E ++++ I Sbjct: 34 RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDEEKYNKQFSKYLKNGLNPEDLPEHFEEIKEKI 191
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 54/199 (27.14%), Postives = 87/199 (43.72%), Query Frame = 1 Query: 22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 618 K R V R T AQI+ GD + SA++ EL + G + N +AY TG LL ++ L +G+ EA +LD+GL + T GN +F IPH E+ +++ E H+ AY L E + E+Y+ F +Y+++G+E + L E ++++ A I Sbjct: 32 KPRLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTEA------------------VLDIGLHRATKGNAIFAILKGALDAGMEIPHGEE----ILPSEERIRGE---------HIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEKLPEHFEEIKAKI 191
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12 Identity = 61/194 (31.44%), Postives = 84/194 (43.30%), Query Frame = 1 Query: 28 RFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKV 606 RFVVR T K I QI++A GDI +A+A++ EL +YG GL N AAY TGLL A R LK G Y+V D+GL T G +VF +P E+ + I H+A++ + L E PE Y+ F +YI RG + L +++V Sbjct: 34 RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVPVGEEVVPSDDR-------------IRGEHIASWAKMLQEASPEAYERFFSKYISRGFDPTQLPTHFEEV 188
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12 Identity = 64/202 (31.68%), Postives = 88/202 (43.56%), Query Frame = 1 Query: 22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIE-AD---NLEELYKKVHAA 615 K R VVR +N T Q+I + GDI LASA + +L YG G +N +A Y TG L A+R L A G D A+LD+GL G++VF IP+ E D +++ E HVA Y +L +DE K F +Y++RG++ AD N EE K + A Sbjct: 32 KSRLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGE----AVLPDESRINGE---------HVANYAESLDDDEIAKL---FSKYLERGLQPADLPKNFEETKKNIDEA 191
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 1 Query: 22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 606 K R VVR TNK I AQ++ A GD+ + L ++G + N AAY GL++ Y+ + E A+LD+GL + G+RVF IPH E+ + S + H+A Y L ++ PE Y++ F Y++RG+ + L EE+ KK+ Sbjct: 32 KPRLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDRISGK-------------HIAEYAEKLKKENPELYKTRFSRYLQRGLAPEELPTHFEEVKKKI 191
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12 Identity = 59/201 (29.35%), Postives = 86/201 (42.79%), Query Frame = 1 Query: 16 TPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 618 T K R VVR T + AQII+ + GD L SA++ +L + G G +N AAAY TG L +R LK EG E A+LD+GL G++VF +PH E D ++ E H+ Y +L E+E K F +Y++RG+ +L E + ++ I Sbjct: 30 TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGE----SVLPDESRIRGE---------HIMEYAESLDEEELRK---RFSKYLERGLSPVDLPEHFDEIKKRI 188
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11 Identity = 58/199 (29.15%), Postives = 90/199 (45.23%), Query Frame = 1 Query: 22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 606 K R V R + ++TAQ+++ GD+VL SA++ EL + G + N AAY TGLLL + +K ED A+LD GL + T G +F IPH +K A D ++L+ HV Y +L ED + Y+ F +Y+++G+ ++L EEL +K+ Sbjct: 32 KPRLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11 Identity = 57/203 (28.08%), Postives = 91/203 (44.83%), Query Frame = 1 Query: 22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD 627 K RFVVR +NK + Q+I + GD V+A+A++ EL + YG + + A Y TG+L A R K G Y+V D+GL K T G RVF +P + D ++ E H+A+Y +L + PE+YQ F + ++RG++ ++ + +++V A I D Sbjct: 32 KPRFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD-----VVPDESRIRGE---------HIASYAESLKNENPEEYQRRFAKLLERGLKPEDYPKHFEEVKAKILED 194
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11 Identity = 56/199 (28.14%), Postives = 85/199 (42.71%), Query Frame = 1 Query: 22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 606 K R VVR TNK + AQI+ A GD + L ++G + N +AAY GL++ Y+ + E A+LD+GL + T G RVF +PH E+ +++ E HVA Y + L E+ PE Y++ F Y++RG+ + L EE+ KK+ Sbjct: 32 KPRLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGEE----VVPSEERIRGE---------HVAEYAKRLKEEAPEAYKARFSRYLQRGLPPEELPSHFEEVKKKI 191 The following BLAST results are available for this feature:
BLAST of DR908162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >DR908162 ID=DR908162; Name=DR908162; organism=Citrus sinensis; type=EST; length=706bpback to top |