DR908162

Overview
NameDR908162
Unique NameDR908162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 55/190 (28.95%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEE 591
            K R V R +  ++TAQ++S    GD+VL SA+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    + ++L+           HV  Y  +L ED  + Y+  F +Y+++G+  ++L E
Sbjct:   32 KPRLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----EEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPE 181          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METKA (50S ribosomal protein L18P OS=Methanopyrus kandleri GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 55/201 (27.36%), Postives = 88/201 (43.78%), Query Frame = 1
Query:   28 RFVVRFTNKDITAQIISASIAGDIVLASAYAHELP-RYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD 627
            R V R T     AQI+  +  GD+ LASA++ EL  ++G +    N  AAY TG L   R L+                          R   RA++D+GL +   G+RVF            IPH E+      +             I   H+A   R + E++PE+Y+  F +Y++RG++ + L E +++V + I  +
Sbjct:   37 RLVARKTLNHNIAQIVDFAPHGDVTLASAHSIELRNKFGWKGHCGNTPAAYLTGYLCGLRALE--------------------------RGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHGEEVLPPEDR-------------IRGEHIANLARQIKEEDPEEYERRFSKYLERGLKPEELPEHFEEVKSKIEEE 198          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 57/199 (28.64%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 606
            K R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    D ++L+           HV  Y  +L ED  + Y+  F +Y+++G+  ++L    EEL +K+
Sbjct:   32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 57/199 (28.64%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNL----EELYKKV 606
            K R V R +  ++ AQ+++    GD+VL SA++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH ++  A    D ++L+           HV  Y  +L ED  + Y+  F +Y+++G+  ++L    EEL +K+
Sbjct:   32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLNGT---------HVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDLPEHVEELKEKI 190          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METVS (50S ribosomal protein L18P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 57/199 (28.64%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 618
            K R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A    D ++L+           H+  Y   L EDE E Y+  F +Y+++G+  ++L E ++++   I
Sbjct:   32 KPRLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 190          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METVA (50S ribosomal protein L18P OS=Methanococcus vannielii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 57/199 (28.64%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAI 618
            K R V R +  +I AQ+++    GDIVL SA++ EL + G +    N  AAY TGLLL ++ ++        EG  E                  A+LD GL + T G  +F            IP  E+  A    D ++L+           H+  Y   L EDE E Y+  F +Y+++G+  ++L E ++++   I
Sbjct:   34 KPRLVARKSLNNIIAQLMAYDEKGDIVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLNGT---------HIKQYAELLKEDE-EAYKKQFSKYLEKGLNPEDLPEHFEELKGKI 192          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METS5 (50S ribosomal protein L18P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 51/199 (25.63%), Postives = 82/199 (41.21%), Query Frame = 1
Query:   28 RFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRA 624
            R VVR TNK +  Q +     GDI +A+A++ EL ++G +    N  A Y TG L   R  K         G   A+                   D+GL   T G R+F            +P                D  V+   +   H+A Y + L +++P+KY+  F  Y+ RG++  +L   +K+V  +I++
Sbjct:   34 RVVVRLTNKYVIVQFVKFDPKGDITVAAAHSRELMKFGWKGDENNSTACYLTGYLAGLRAKKA--------GMTSASA------------------DLGLFTPTKGARIFYVLKGVIDSGVKVPMG--------------DVGVNNDRLAGKHIAEYAKKLEQEDPDKYRGLFSRYLARGLDPKDLPAHFKEVLNSIKS 192          
BLAST of DR908162 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 49/130 (37.69%), Postives = 62/130 (47.69%), Query Frame = 1
Query:   22 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 411
            K R VVR TN+ I  QII+A + GD    +A + EL ++G E  L N  AAY TG+LLA R LK     A  EG                     A+LD+GL + T G RVF            IPH+E+
Sbjct:   32 KPRMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK-----AGQEG---------------------AILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
The following BLAST results are available for this feature:
BLAST of DR908162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RL18_METM52.260e-1128.9550S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METKA2.260e-1127.3650S ribosomal protein L18P OS=Methanopyrus kandler... [more]
RL18_METM72.951e-1128.6450S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM62.951e-1128.6450S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METVS3.855e-1128.6450S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METVA3.855e-1128.6450S ribosomal protein L18P OS=Methanococcus vannie... [more]
RL18_METS56.575e-1125.6350S ribosomal protein L18P OS=Metallosphaera sedul... [more]
RL18_METHJ8.587e-1137.6950S ribosomal protein L18P OS=Methanospirillum hun... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16290 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908162 ID=DR908162; Name=DR908162; organism=Citrus sinensis; type=EST; length=706bp
AAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAA
CAAAGATATCACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAG
TCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTG
GGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCG
CCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTG
AGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCT
TTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCG
TGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTC
ACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGAC
GCTGAAGTTCACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACAT
GAGGACTTTGATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTG
AATACATCAAGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAG
AAGGTACATGCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAA
GAAGCCTCCAGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACG
AGGAAA
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