DR908095

Overview
NameDR908095
Unique NameDR908095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  104 DYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 376
            DY  G  GLD ++  L     N  G PPA  + ++A+P+++I E      L+C VC +D+ +G   +++PC H FH+ CI+PWLE H +CPVCR  L
Sbjct:  177 DYAWGANGLDTIITQLLNQFENT-GPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  104 DYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQL 376
            DY  G  GLD ++  L     N  G PPA  E ++A+P+++I E      L+C VC +D+ +G   +++PC H FH+ CI+PWLE H +CPVCR  L
Sbjct:  177 DYAWGANGLDTIITQLLNQFENT-GPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 42/91 (46.15%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  179 PPAQKEAVEAMPSVKI---EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 442
            PPA K  VE +P   I   +  L+C VCL +FE    A EMPC H FHS CILPWL   +SCP+CR +LP D+   E  R   +   Q++H
Sbjct:   52 PPAAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYEEHRRDKARKQQQQH 142          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.419e-16
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  179 PPAQKEAVEAMPSVKIEET---LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 442
            PPA K  VE++P   I      L+C VCL +FE      EMPC H FHS CILPWL   +SCP+CR +LP D+   E  +   +   Q++H
Sbjct:   64 PPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQQQQH 154          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.419e-16
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  179 PPAQKEAVEAMPSVKI---EETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 442
            PPA K AVE +P   I   +  L+C VCL +FE    A EMPC H FHS CILPWL   +SCP+CR +LP D+   E  +   +   Q++H
Sbjct:   52 PPAAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYEEHKRDKARKQQQKH 142          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  179 PPAQKEAVEAMPSVKIEET---LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREH 442
            PPA K  VE++P   I  +   L+C VCL +FE      EMPC H FHS CILPWL   +SCP+CR +LP D+   E  +   +   Q++H
Sbjct:   64 PPAAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQQQQH 154          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe GN=SPAP32A8.03c PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 2
Query:   92 GSLGDYFVGP-GLDLLLQHLAENDPNRYGTPPAQKEAVEAM-----PSVKIEETLQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADEFKPESERSRNSSNHQREHEHHSSDHGTHASSEEGDGEG--RNES 514
            G+ GDY  G  GLD ++  L E         PA ++ +  M     P   I+E  +C++C++ F+I  +  ++PCKH FH  CI PWL ++ +C +CR   P D   P S++ RN+++    + H+ S+H   ++S   D     RNES
Sbjct:  340 GNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRA--PVD---PNSQQ-RNNTSTDSANGHNPSNHANPSTSTTNDQGATLRNES 482          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 2
Query:   80 HTPIGSLGDYFVGPGLDLLLQHLAENDPN-RYGTPPAQKEAVEAMPSVKIEET-----LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLPADE-FKPESERSRNSSNHQREHEH 448
            H P G LG   +   L  L      N  +     P A K A+  +P  +I ++     L+CSVC +  E G + + +PCKH+FH +CIL WL+  +SCP+CR +L  D+    E  R R    ++RE E+
Sbjct:   10 HEPTGPLGANDLARNLKRLQVLAIMNGIDMEIEVPEASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEELRRFRQDEANRREREN 139          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: PJA1_MOUSE (E3 ubiquitin-protein ligase Praja1 OS=Mus musculus GN=Pja1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 2
Query:  179 PPAQKEAVEAMPSVKIEET-------LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 379
            PPA KE+++A+P + + E        + C +C  ++  G  A E+PC H FH  C+  WL+   +CPVCRC  P
Sbjct:  502 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575          
BLAST of DR908095 vs. ExPASy Swiss-Prot
Match: PJA1_HUMAN (E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens GN=PJA1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 2
Query:  179 PPAQKEAVEAMPSVKIEET-------LQCSVCLDDFEIGTEAKEMPCKHKFHSQCILPWLELHSSCPVCRCQLP 379
            PPA KE+++A+P + + E        + C +C  ++  G  A E+PC H FH  C+  WL+   +CPVCRC  P
Sbjct:  567 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640          
The following BLAST results are available for this feature:
BLAST of DR908095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
R126B_XENLA3.731e-1741.24RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
R126A_XENLA3.731e-1742.27RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
RN181_HUMAN1.852e-1646.15E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
RN181_MOUSE2.419e-1643.96E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_BOVIN2.419e-1646.15E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN181_RAT3.159e-1643.96E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
YKW3_SCHPO4.125e-1632.89Uncharacterized RING finger protein P32A8.03c OS=S... [more]
RN181_DROME1.242e-1234.62E3 ubiquitin-protein ligase CG7694 OS=Drosophila m... [more]
PJA1_MOUSE6.165e-1237.84E3 ubiquitin-protein ligase Praja1 OS=Mus musculus... [more]
PJA1_HUMAN6.165e-1237.84E3 ubiquitin-protein ligase Praja1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16223 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908095 ID=DR908095; Name=DR908095; organism=Citrus sinensis; type=EST; length=726bp
TGTGATTTTAATCAACCCTTTTAATCAGACTATCATTGTTCAGGGCGGTT
CTTACGATGGTCAACACCAGAATCATAATCATACCCCAATTGGGTCGCTA
GGCGACTACTTTGTTGGTCCTGGTTTGGACTTGTTGTTGCAACATTTGGC
TGAGAATGATCCAAACAGATATGGGACTCCACCAGCACAAAAGGAGGCAG
TTGAAGCAATGCCTAGTGTGAAAATTGAGGAGACTTTGCAGTGTTCTGTG
TGTTTGGATGATTTCGAGATTGGTACTGAAGCAAAGGAAATGCCATGTAA
GCATAAGTTTCATAGTCAGTGTATATTGCCATGGTTGGAGCTTCATAGTT
CTTGTCCAGTTTGTCGGTGTCAATTGCCTGCTGATGAATTCAAGCCTGAG
TCTGAGAGGTCTCGGAACAGCAGTAACCACCAAAGGGAGCATGAGCATCA
TAGTAGCGATCATGGTACTCATGCTAGCAGTGAAGAGGGAGATGGTGAAG
GGAGAAATGAAAGTGGGAGTAGATTTTCAATTCCGTGGCCTTTCAATGGT
CTGTTCTCTTCCTCAAGTTCTCATTCTGGAGGAAACAATTCAACCTCAAC
TTCTCAATCCGGAAGTACTTCTCAAATGAATGAGAATTGAGTATGTTTGC
ATATGATGTTATTAGCTGCTTGTCCTGTATGTTGCTTGAATGATGAGTTG
TCTCTGTACATAGTATCTTACTTGCC
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