DR908089

Overview
NameDR908089
Unique NameDR908089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_ENCCU (Glycyl-tRNA synthetase OS=Encephalitozoon cuniculi GN=ECU10_1790 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.223e-35
Identity = 94/253 (37.15%), Postives = 135/253 (53.36%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKN---VCIKKNMLLISKEKKKEHQRVFT----PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            EI  SYGWIECVGIADR+ YDL  H + S V L  + + +EP+E+E+ V+   KKE G   +     ++                   S+  +E  V ++G+N   + +K +   I+ E  +  ++VF     P VIEPSFGIGRI+Y L EHSFY R     ++   VFRF P +AP++C +  L+   ++ E    I   L   G+   ++    SIG++Y+  DELG+PF IT D        VTIRERD
Sbjct:  318 EIYTSYGWIECVGIADRACYDLSCHEDGSKVDLRCKRRLAEPKEIEEWVLKLDKKEWGAKLRDRFSVLM-------------ETVNGLSQKYIEKNVVSIGENRNRLSVKFDEYTINIECSRVKKKVFVENVIPDVIEPSFGIGRILYALIEHSFYLR-----EDSRPVFRFKPAIAPVQCAIGYLIHFDEFNEHILNIKRFLTDNGLVVHVNERSCSIGRKYSSCDELGIPFFITFDPDFLKDRMVTIRERD 552          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_METKA (Glycyl-tRNA synthetase OS=Methanopyrus kandleri GN=glyS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.743e-33
Identity = 95/241 (39.42%), Postives = 129/241 (53.53%), Query Frame = 2
Query:   17 YGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            +GW+E VGIADR+ YDL  H+E SG  L A  +  EP+ V +    PV KELG  FK     +                     KG +   V   GK V +      I KEK    +  F P VIEPS+GI RI+YC+ EH+F        D +  VFRFP  +API+  VFPL++     E A+ ++ +L+  G + + D +G SIG+RYAR DE+GVP+ +TVD       +VTIR+RD
Sbjct:  319 FGWVEVVGIADRTDYDLKKHSEHSGEDLRAFRELEEPKIVYR--PEPVMKELGPRFKSDAPKIAEALRRITAESEDEL------KGGLTVEVD--GKEVEVPPECYEIVKEKVTGER--FYPHVIEPSYGIDRILYCVLEHNF--------DPEEGVFRFPAWLAPIEVGVFPLLKRSDMVEYARRVARMLREEGFTVEYDDSG-SIGRRYARADEIGVPYCVTVDHETLEDDTVTIRDRD 538          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_METVS (Glycyl-tRNA synthetase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=glyS PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.339e-33
Identity = 89/241 (36.93%), Postives = 125/241 (51.87%), Query Frame = 2
Query:   17 YGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            YGWIECVGIADR+ YDL AH + SG  L    +F E +E+E   I    K +G  FKG  K  +                    K   ++ + T  ++  +    L + K KK        P VIEPS+GI RI YC+ EH+F     K  D++  +  F   V+P+K  VFPLV  +  +E+A+ +    +  GI  + D +G +IG+RY R DE+G PF +TVD      ++VTIRERD
Sbjct:  323 YGWIECVGIADRTDYDLRAHMKNSGEDLSVFVEFDESKEIEVYEIELNYKLVGKTFKGDAK--ILEESLKELSNDKMEELIKTLKNNEKYILKTCKRDFEVLNEYLTVKKVKKNVTGEKIVPHVIEPSYGIDRITYCVIEHAF-----KEEDDR-TLLAFVNTVSPVKVGVFPLVNKEGMDEIAENLKNKFRKNGIIAEYDDSG-AIGRRYMRMDEIGTPFCVTVDGETLKDNTVTIRERD 554          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_METJA (Glycyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=glyS PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.339e-33
Identity = 93/241 (38.59%), Postives = 123/241 (51.04%), Query Frame = 2
Query:   17 YGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERD 727
            +GWIECVGIADR+ YDL +H+  SGV L    +  E RE+E   I    K +G  FK   K +                    + G+V   +   GK   I K+ + I K KK        P VIEPS+GI RI YCL EHS+        +E        P +APIK  V PLV      ++AK I  +L+  GI  + D +G +IG+RY R DE+GVPF ITVD  +    +VT+RER+
Sbjct:  324 FGWIECVGIADRTDYDLRSHSAHSGVELSVFVELDEEREIETYEINLNYKVVGKIFKKDTKAIEAYINNLSEKEKEEFVKNIENDGKVIINID--GKEFEILKDYVEIKKVKKVIKGEKVIPHVIEPSYGIDRITYCLLEHSY------REEEDRVYLDLKPSIAPIKAYVLPLVNKDDMPKIAKEIEQMLRENGIIAEYDDSG-AIGRRYMRADEIGVPFCITVDGQTLEDRTVTVRERN 555          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_METM5 (Glycyl-tRNA synthetase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=glyS PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.089e-32
Identity = 91/241 (37.76%), Postives = 123/241 (51.04%), Query Frame = 2
Query:   17 YGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            YGWIECVGIADR+ YDL AH + S   L    +  E +E+E   I    K +G  FKG  K +                    ++G  ++ + T  ++  + K  L   K KK        P VIEPS+GI RI YC+ EH+F        DE   V  F   V+PIK  VFPLV  +   E+A  +   L+  G+  + D +G +IG+RY R DE+G PF +T+D    + SSVTIRERD
Sbjct:  323 YGWIECVGIADRTNYDLLAHMKNSSEDLSVFVELDEDKEIEVYEIELNYKLVGRTFKGDSKVLEESLKELDDKKMEELVEALETEG--KYVLSTCKRDFELLKEYLTAKKVKKTVKGEKIIPHVIEPSYGIDRITYCVMEHAF------KEDEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMDLKNKLRENGLIAEYDDSG-AIGRRYMRMDEVGTPFCVTIDGETLTDSSVTIRERD 554          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_METMP (Glycyl-tRNA synthetase OS=Methanococcus maripaludis GN=glyS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.858e-32
Identity = 92/241 (38.17%), Postives = 120/241 (49.79%), Query Frame = 2
Query:   17 YGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERD 727
            YGWIECVG+ADR+ YDL AH + SG  L    +  E  E+E   I    K +G  FKG  K +                    ++G+     C   ++  I K  L   K KK        P VIEPS+GI RI YC+ EH+F        DE   V  F   V+PIK  VFPLV  +   E+A  +   L+  G+  + D +G +IG+RY R DE+G PF IT+D  +    SVTIRERD
Sbjct:  323 YGWIECVGVADRTNYDLLAHMKNSGDDLSVFVELDEEHEIEAYEIELNYKLVGRTFKGDAKVLEESLKELDDKKMEELVEALETEGKYVLKTCK--RDFEILKEYLTAKKVKKIVKGEKIIPHVIEPSYGIDRITYCVMEHAF------KEDEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMDLKNKLRENGLIAEYDDSG-AIGRRYMRMDEVGTPFCITIDGETLKDRSVTIRERD 554          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_METM6 (Glycyl-tRNA synthetase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=glyS PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.139e-32
Identity = 91/241 (37.76%), Postives = 120/241 (49.79%), Query Frame = 2
Query:   17 YGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDS----TSSVTIRERD 727
            YGWIECVGIADR+ YDL AH + SG  L    +  E  E+E   I    K +G  FKG  K +                    ++G+     C   ++  + K  L   K KK        P VIEPS+GI RI YC+ EH+F        +E   V  F   V+PIK  VFPLV  +   E+A  +   L+  G+  + D +G +IG+RY R DE+G PF IT+D      +SVTIRERD
Sbjct:  323 YGWIECVGIADRTNYDLLAHMKNSGEDLSVFVELDEEHEIEAYEIELNYKLVGRTFKGDAKVLEESLKELDDKKMEELVEALETEGKYTLKTCK--RDFELLKEYLTAKKVKKIVKGEKIIPHVIEPSYGIDRITYCVMEHAF------KEEEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMDLKNKLRENGLIAEYDDSG-AIGRRYMRMDEVGTPFCITIDGETLVDNSVTIRERD 554          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_METM7 (Glycyl-tRNA synthetase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=glyS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 91/241 (37.76%), Postives = 120/241 (49.79%), Query Frame = 2
Query:   17 YGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVDSTS----SVTIRERD 727
            YGWIECVGIADR+ YDL AH + S   L    +  E +EVE   I    K +G  FKG  K +                    ++G+     C   ++  I K  L   K KK        P VIEPS+GI RI YC+ EH+F        +E   V  F   V+PIK  VFPLV  +   E+A  +   L+  G+  + D +G +IG+RY R DE+G PF +T+D  +    SVTIRERD
Sbjct:  323 YGWIECVGIADRTNYDLLAHMKNSSEDLSVFVELDEDKEVEVYEIELNYKLVGRTFKGDAKILEESLKELNDKKMEELVEALETEGKYVLKTCK--RDFEILKEYLTAKKVKKIVKGEKIIPHVIEPSYGIDRITYCVMEHAF------KEEEDRTVMGFSNAVSPIKVGVFPLVNKEGMPEIAMDLKNKLRENGLIAEYDDSG-AIGRRYMRMDEVGTPFCVTIDGETLTDRSVTIRERD 554          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_METTH (Glycyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum GN=glyS PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 89/247 (36.03%), Postives = 124/247 (50.20%), Query Frame = 2
Query:   14 SYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFT-----PSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            SYGWIE +GIADR+ YDL +H++ SG  L    ++ EPR + K  + P   +LG  F+     +                       E+E  +   G+ +   +  +L      ++ + V T     P VIEPSFGI RIIY L  HS         D +   FR PP VAP++ TV PLV  ++    A  I   L+ +G   + D +GT IG+RYAR DE+GVPFA+TVD       +VT+R RD
Sbjct:  318 SYGWIEIIGIADRTDYDLRSHSQHSGEDLRVFIEYDEPRRIRKRAVKPDMGKLGPKFRKDAARIASALSEVDVE-------------EIEKALDEEGRFILEGEFEILPDDVSFEDVEEVVTGRKVYPHVIEPSFGIDRIIYTLLLHSL------VDDGERTYFRLPPHVAPVEVTVLPLVNREEMVMTALEIERNLRRSGFIAEFDSSGT-IGRRYARADEIGVPFAVTVDHETLEDGTVTLRNRD 544          
BLAST of DR908089 vs. ExPASy Swiss-Prot
Match: SYG_ARCFU (Glycyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=glyS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 88/246 (35.77%), Postives = 122/246 (49.59%), Query Frame = 2
Query:    2 EIECSYGWIECVGIADRSAYDLHAHTEKSGVALVAQEKFSEPREVEKLVIAPVKKELGLAFKGSQKNVVXXXXXXXXXXXXXXXXXXXSKGEVEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEEVAKVISTLLKVAGISHKIDITGTSIGKRYARTDELGVPFAITVD----STSSVTIRERD 727
            E+  SYGWIE VGIADR+ YDL  H++ SG  L     + EP +V++  I P+  +LG  F+   K V                       EVE  V   G+ V + K    I + +++       P VIEPSFG+ RI Y + EH+F         E+  V R    V+PI+  V PL+  + +E     I  +L+  GI    D +G SIG+RY R DE+G PF +TVD       +VTIR+RD
Sbjct:  303 EVLTSYGWIEVVGIADRTNYDLKRHSKFSGEDLSVFVPYEEPVKVKRRKIVPILSKLGPEFRQKAKKVA---------EALEALNVEADLDEVEVEVD--GEKVKVTKEFFEIQEVEEEVTGEKVIPHVIEPSFGLDRITYSVLEHAF--DKDVVDGEERRVLRLKRWVSPIEVAVLPLLSREPFESKGMEIVQMLREEGIFTDYDDSG-SIGRRYRRFDEIGTPFCVTVDHQTFEDETVTIRDRD 534          
The following BLAST results are available for this feature:
BLAST of DR908089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
SYG_ENCCU5.223e-3537.15Glycyl-tRNA synthetase OS=Encephalitozoon cuniculi... [more]
SYG_METKA3.743e-3339.42Glycyl-tRNA synthetase OS=Methanopyrus kandleri GN... [more]
SYG_METVS8.339e-3336.93Glycyl-tRNA synthetase OS=Methanococcus vannielii ... [more]
SYG_METJA8.339e-3338.59Glycyl-tRNA synthetase OS=Methanocaldococcus janna... [more]
SYG_METM51.089e-3237.76Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METMP1.858e-3238.17Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METM64.139e-3237.76Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METM71.204e-3137.76Glycyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYG_METTH2.271e-3036.03Glycyl-tRNA synthetase OS=Methanobacterium thermoa... [more]
SYG_ARCFU4.283e-2935.77Glycyl-tRNA synthetase OS=Archaeoglobus fulgidus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16217 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908089 ID=DR908089; Name=DR908089; organism=Citrus sinensis; type=EST; length=729bp
TGAGATTGAGTGTTCGTATGGGTGGATTGAATGTGTCGGCATTGCAGATA
GGTCTGCGTATGACCTGCATGCTCACACGGAGAAGAGTGGTGTCGCGCTT
GTAGCTCAGGAGAAATTTTCAGAACCTAGGGAAGTGGAGAAATTGGTAAT
TGCTCCAGTGAAGAAAGAGCTGGGTCTTGCATTCAAGGGAAGCCAAAAGA
ATGTGGTTGAAGCTTTGGAGGCTATGAATGAGAAAGAAGCTATGGAGATG
AAGGCCGCATTGGAATCGAAAGGGGAGGTGGAGTTTTATGTCTGCACTCT
GGGAAAAAATGTTTGCATTAAGAAGAACATGTTGTTAATTTCTAAGGAGA
AAAAGAAAGAACACCAGAGAGTTTTCACCCCATCAGTTATAGAGCCATCT
TTTGGCATTGGTCGAATTATATACTGCCTCTATGAGCACTCTTTCTATAC
AAGGCCAAGTAAAGCTGGGGATGAACAGTTAAATGTTTTCCGTTTCCCCC
CTCTTGTGGCACCTATTAAGTGCACTGTTTTCCCACTGGTTCAGAATCAA
CAGTATGAGGAGGTTGCCAAAGTCATTTCCACGTTATTAAAAGTTGCTGG
AATCTCTCACAAGATTGACATAACAGGCACCTCCATAGGGAAACGGTATG
CAAGAACAGATGAACTTGGTGTACCGTTTGCTATAACTGTTGATTCAACA
TCCTCGGTGACAATCCGAGAGCGAGATAG
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