DR908085

Overview
NameDR908085
Unique NameDR908085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_XYLFT (Glutaminyl-tRNA synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=glnS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.089e-26
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 2
Query:    5 TSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKK-------TKPKGVLHWVAEP 481
            T  ++  FV+ IGIS+ +S+I    LE  +RE L+  APR M  + P+K+V+TN+      H +   +P+   DD      VPFS  ++IE  DF     K +  L PG  V LR A   +  EV+ + +   ++ +    DP+ +        K KG +HWV+ P
Sbjct:  327 TPAAMRLFVERIGISKQNSIIDFSVLENCLRENLDTIAPRRMATIAPMKLVLTNLAED---HEEQLIFPNHPKDDTQGTRTVPFSRELWIERDDFSEAPPKGWKRLIPGGEVRLRGAGIARIDEVVKNAEGH-VIALHGWLDPTSRPGMEGAHRKVKGTIHWVSAP 488          

HSP 2 Score: 52.7582 bits (125), Expect = 8.089e-26
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  510 EVRLFEKLFNSENPAELDD---WLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGTFAVDK-DSTPEKLVFNRT 731
            E+RL+++LF+ E P +  D   +   LNPDSK V+   Y EP+    A    FQFERLG F  D+ D      VFNR+
Sbjct:  494 EIRLYDRLFSIEKPDDNTDGKTYRDFLNPDSKRVV-HGYIEPAAAQTAPEHAFQFERLGYFVTDRHDHDATHPVFNRS 570          
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_CHRVO (Glutaminyl-tRNA synthetase OS=Chromobacterium violaceum GN=glnS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.371e-25
Identity = 53/159 (33.33%), Postives = 79/159 (49.69%), Query Frame = 2
Query:   17 INAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPS------KKTKPKGVLHWVA 475
            I  F Q IG+S+S+++I +  LE  +RE L   +PR M V+NPLKV +TN ++       A   P            VP +  ++IE  DF       +  L  G  V LRY++ IKC EV+  D  + I+ ++   D        +  K KGV+HWV+
Sbjct:  309 IKLFAQRIGVSKSENIIDMAILEGAVRETLENDSPRVMAVVNPLKVTLTNYDAAVTASRSAPFHPH---HPEFGERDVPIAREIWIERDDFAETPPPKWQRLTAGGEVRLRYSYVIKCDEVV-KDAADEIVELKCSIDHDTLGKNPEGRKVKGVIHWVS 463          

HSP 2 Score: 52.7582 bits (125), Expect = 1.371e-25
Identity = 34/83 (40.96%), Postives = 45/83 (54.22%), Query Frame = 3
Query:  510 EVRLFEKLFNSENP-------AELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGTFAVDK--DSTPEKLVFNRT 731
            +VR +E+LF  + P        E  D+   LNP+S  ++P AY E S+  A    RFQFERLG F  D+      +K VFNRT
Sbjct:  471 DVRWYERLFTEQRPDAVRGEDGEYVDFRQFLNPESLKLVP-AYVEASVLQAEPESRFQFERLGYFVTDRYEHRKGDKAVFNRT 552          
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_XYLFA (Glutaminyl-tRNA synthetase OS=Xylella fastidiosa GN=glnS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.784e-25
Identity = 55/166 (33.13%), Postives = 83/166 (50.00%), Query Frame = 2
Query:    5 TSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKK-------TKPKGVLHWVAEP 481
            T  ++  FV+ IGIS+ +S+I    LE  +RE L+  APR M  + PLK+V+TN+      H +   +P+   DD      +PFS  ++IE  DF     K +  L PG  V LR A   +  EV+  +    I+ +    DP+ +        K KG +HWV+ P
Sbjct:  327 TPAAMRLFVERIGISKQNSIIDFSVLENCLRENLDTIAPRRMATIAPLKLVLTNLPED---HEEQLIFPNHPKDDTQGTRTMPFSRELWIERDDFSEIPPKGWKRLVPGGEVRLRGAGIARVDEVV-KNAAGDIIALHGWLDPTSRPGMEGAHRKVKGTIHWVSAP 488          

HSP 2 Score: 52.7582 bits (125), Expect = 1.784e-25
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 3
Query:  510 EVRLFEKLFNSENPAELDD---WLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGTFAVDK-DSTPEKLVFNRT 731
            E+RL+++LF+ E P +  D   +   LNPDSK V+   Y EP+    A    FQFERLG F  D+ D      VFNR+
Sbjct:  494 EIRLYDRLFSVEKPDDNTDGKTYRDVLNPDSKRVV-HGYIEPAAAQTAPEHAFQFERLGYFVTDRHDHDAAHPVFNRS 570          
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_BUCAP (Glutaminyl-tRNA synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=glnS PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.023e-25
Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 2
Query:    5 TSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYD-------PSKKTKPKGVLHWVA 475
            T++SI  F   IGI++ ++LI    LEY IR+ELNK A RTM VL P+K+ + N+++    H +    P+         +++ F+N +YIE  DF+ K  K Y  L  G+ V LRYA+ IK  E I  D+   I+ I    D       P  +  P  V+HW+A
Sbjct:  304 TASSIRDFCHRIGITKQNNLIEFSMLEYCIRKELNKKAIRTMAVLEPIKIFLYNIDND---HEEKLIVPNHPKHLHLGTHEIIFTNTIYIEREDFKEKYDKKYKRLKIGEEVRLRYAYIIK-AEKIEKDESGNIIKIICFCDINSLGKKPINRKNP-AVIHWIA 462          

HSP 2 Score: 45.4394 bits (106), Expect = 3.023e-25
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 3
Query:  516 RLFEKLFNSENPAELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDR--------FQFERLGTFAVDK-DSTPEKLVFNRT 731
            +L+ +LF  +NP +  ++LS LN +S +++   + E  +    +           FQFER G F VD+ DS   KLVFNRT
Sbjct:  472 KLYNQLFKIKNPDQEKNFLSYLNSNS-LIVKNGFVEKKIAQKIIKKMSNNFIKLFFQFERTGYFCVDEVDSKENKLVFNRT 551          
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_POLNS (Glutaminyl-tRNA synthetase OS=Polynucleobacter necessarius (strain STIR1) GN=glnS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.931e-25
Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 2
Query:    5 TSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGL------APGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKT--------KPKGVLHWVA 475
            T  SI  F + IG+S++DS I +  L+  +R++L   APR   VL PLK+V+ N ++ T     A R P+        F    F+  ++IE  DF  +  K ++ L       PG  V LR+ F ++CT    +D +  +  +   + P  K+        K KG +HW++
Sbjct:  334 TPESIRLFCERIGVSKADSWIDMSTLDQALRDDLEVRAPRATAVLKPLKLVVENFDAPTKEACSAPRHPNYPEWGNREF---NFTRELWIEADDFMQEPIKGFFRLYPPIDDQPGSRVRLRHGFVVECTG-FETDAQGNVTQVNVTHFPDSKSGTPGSNNYKVKGNIHWIS 500          

HSP 2 Score: 59.3066 bits (142), Expect = 3.931e-25
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 3
Query:  510 EVRLFEKLFNSENPAELD-DWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGTFAVDK-DSTPEKLVFNR 728
            EVRL++ LF    P   D ++L  +NP+SK  I  AY EP +  A   DRFQFER G F  D+ DS P K +FNR
Sbjct:  508 EVRLYDHLFTDPYPDSGDKNFLDAINPNSKQTI-SAYLEPCMKDAKAEDRFQFERHGYFVADQSDSKPGKPIFNR 581          
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_CLOPS (Glutaminyl-tRNA synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=glnS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 65/163 (39.88%), Postives = 90/163 (55.21%), Query Frame = 2
Query:    5 TSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKT-------KPKGVLHWV 472
            T  SI  F + IG++++DS +    LE+ IRE+L +TAPR M V+NPLK+VITN   G    L+ +  P    D+++    V FS  +YIE  DF     K Y+ L PG  V L+ A+ +KC EVI  D+   +  I   YDP  K+       K KG +HWV
Sbjct:  301 TPKSIRNFCKAIGVAKADSTVDYQMLEHFIREDLQETAPRAMAVINPLKLVITNYPEGKSEILEIENNP---KDESAGKRAVTFSREIYIEREDFMENPPKKYFRLFPGNEVRLKGAYFVKCNEVI-KDENGEVTEIHCTYDPETKSGTGFTGRKVKGTIHWV 459          
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_CLOPE (Glutaminyl-tRNA synthetase OS=Clostridium perfringens GN=glnS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 66/163 (40.49%), Postives = 90/163 (55.21%), Query Frame = 2
Query:    5 TSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKT-------KPKGVLHWV 472
            T  SI  F + IG++++DS +    LE+ IRE+L +TAPR M V+NPLK+VITN   G    L+ +  P    D+++    V FS  VYIE  DF     K Y+ L PG  V L+ A+ +KC EVI  D+   +  I   YDP  K+       K KG +HWV
Sbjct:  301 TPKSIRNFCKAIGVAKADSTVDSQMLEHFIREDLQETAPRAMAVINPLKLVITNYPEGESEILEIENNP---KDESAGKRAVTFSREVYIEREDFMENPPKKYFRLFPGNEVRLKGAYFVKCNEVI-KDENGEVTEIHCTYDPETKSGTGFTGRKVKGTIHWV 459          
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_CLOP1 (Glutaminyl-tRNA synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=glnS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 66/163 (40.49%), Postives = 90/163 (55.21%), Query Frame = 2
Query:    5 TSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKKT-------KPKGVLHWV 472
            T  SI  F + IG++++DS +    LE+ IRE+L +TAPR M V+NPLK+VITN   G    L+ +  P    D+++    V FS  VYIE  DF     K Y+ L PG  V L+ A+ +KC EVI  D+   +  I   YDP  K+       K KG +HWV
Sbjct:  301 TPKSIRNFCKAIGVAKADSTVDSQMLEHFIREDLQETAPRAMAVINPLKLVITNYPEGESEILEIENNP---KDESAGKRAVTFSREVYIEREDFMENPPKKYFRLFPGNEVRLKGAYFVKCNEVI-KDENGEVTEIHCTYDPETKSGTGFTGRKVKGTIHWV 459          
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_XANCP (Glutaminyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris GN=glnS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.659e-25
Identity = 54/164 (32.93%), Postives = 86/164 (52.44%), Query Frame = 2
Query:    5 TSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKK-------TKPKGVLHWVA 475
            T  ++  FV  +GIS+ +S+I    LE  +RE+L+  A R M V++PLK+V+TN+  G   H +  ++ +   D++    +VPF+  ++IE  DF     K +  L PG  + LR A   +  EVI  D    I+ +R   DP  +        K KG +HWV+
Sbjct:  327 TPAAMRLFVDRVGISKQNSVIDFSVLEGCLREDLDAAAARRMAVIDPLKLVLTNLPEG---HTETLQFSNHPKDESFGTREVPFARELWIEREDFAEVPPKGWKRLVPGGEIRLRGAGIARVDEVI-KDAAGEIVELRGWLDPESRPGMIGSNRKVKGTIHWVS 486          

HSP 2 Score: 48.9062 bits (115), Expect = 6.659e-25
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 3
Query:  510 EVRLFEKLFNSENP---AELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGTFAVD-KDSTPEKLVFNRT 731
            E+RL+++LF+ E P   +E   +   LNP+SK  +   Y EPS   AA    FQFER G F  D +D +     FNR+
Sbjct:  494 EIRLYDRLFSVEKPDDESEGKTYRDYLNPESKRSV-RGYVEPSAAQAAPEQAFQFERTGYFVADRRDHSAATPAFNRS 570          
BLAST of DR908085 vs. ExPASy Swiss-Prot
Match: SYQ_XANC8 (Glutaminyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glnS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.659e-25
Identity = 54/164 (32.93%), Postives = 86/164 (52.44%), Query Frame = 2
Query:    5 TSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVPFSNVVYIEHSDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETILHIRAEYDPSKK-------TKPKGVLHWVA 475
            T  ++  FV  +GIS+ +S+I    LE  +RE+L+  A R M V++PLK+V+TN+  G   H +  ++ +   D++    +VPF+  ++IE  DF     K +  L PG  + LR A   +  EVI  D    I+ +R   DP  +        K KG +HWV+
Sbjct:  327 TPAAMRLFVDRVGISKQNSVIDFSVLEGCLREDLDAAAARRMAVIDPLKLVLTNLPEG---HTETLQFSNHPKDESFGTREVPFARELWIEREDFAEVPPKGWKRLVPGGEIRLRGAGIARVDEVI-KDAAGEIVELRGWLDPESRPGMIGSNRKVKGTIHWVS 486          

HSP 2 Score: 48.9062 bits (115), Expect = 6.659e-25
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 3
Query:  510 EVRLFEKLFNSENP---AELDDWLSDLNPDSKVVIPEAYAEPSLHSAAVGDRFQFERLGTFAVD-KDSTPEKLVFNRT 731
            E+RL+++LF+ E P   +E   +   LNP+SK  +   Y EPS   AA    FQFER G F  D +D +     FNR+
Sbjct:  494 EIRLYDRLFSVEKPDDESEGKTYRDYLNPESKRSV-RGYVEPSAAQAAPEQAFQFERTGYFVADRRDHSAATPAFNRS 570          
The following BLAST results are available for this feature:
BLAST of DR908085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
SYQ_XYLFT8.089e-2632.53Glutaminyl-tRNA synthetase OS=Xylella fastidiosa (... [more]
SYQ_CHRVO1.371e-2533.33Glutaminyl-tRNA synthetase OS=Chromobacterium viol... [more]
SYQ_XYLFA1.784e-2533.13Glutaminyl-tRNA synthetase OS=Xylella fastidiosa G... [more]
SYQ_BUCAP3.023e-2536.59Glutaminyl-tRNA synthetase OS=Buchnera aphidicola ... [more]
SYQ_POLNS3.931e-2529.82Glutaminyl-tRNA synthetase OS=Polynucleobacter nec... [more]
SYQ_CLOPS6.450e-2539.88Glutaminyl-tRNA synthetase OS=Clostridium perfring... [more]
SYQ_CLOPE6.450e-2540.49Glutaminyl-tRNA synthetase OS=Clostridium perfring... [more]
SYQ_CLOP16.450e-2540.49Glutaminyl-tRNA synthetase OS=Clostridium perfring... [more]
SYQ_XANCP6.659e-2532.93Glutaminyl-tRNA synthetase OS=Xanthomonas campestr... [more]
SYQ_XANC86.659e-2532.93Glutaminyl-tRNA synthetase OS=Xanthomonas campestr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16213 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-25_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908085 ID=DR908085; Name=DR908085; organism=Citrus sinensis; type=EST; length=731bp
TGTGACTTCAACTTCTATTAATGCTTTTGTTCAAGGGATTGGAATCTCAC
GAAGTGATAGTCTAATTCGTTTGGATCGCCTGGAGTATCATATAAGAGAG
GAACTAAACAAAACAGCACCTCGCACAATGGTTGTGTTGAATCCTCTCAA
GGTGGTTATTACTAACATGGAATCTGGCACAATTATGCATCTTGACGCCA
AAAGATGGCCTGATGCTCAAGCAGATGATGCATCAGCTTTCTACAAGGTT
CCCTTTTCAAACGTTGTGTACATTGAGCATTCTGATTTTCGAATGAAAGA
TTCAAAAGATTATTATGGCCTTGCTCCTGGTAAATCTGTCCTACTCAGAT
ATGCATTCCCTATAAAGTGCACGGAAGTGATTTTATCTGATGATAAAGAA
ACCATTCTTCACATCCGGGCTGAATATGATCCTTCCAAAAAGACAAAACC
AAAGGGAGTTCTTCACTGGGTTGCTGAGCCTTCCCCTGGTGTCAATCCAC
TAAGGGGTGGAAGTCAGATTGTTTGAAAAATTGTTCAACTCTGAGAATCC
TGCAGAACTTGATGATTGGCTTTCTGATTTGAATCCGGATTCCAAAGTGG
TGATTCCTGAAGCATATGCAGAACCATCACTTCACAGTGCTGCTGTCGGG
GACAGATTCCAATTTGAAAGGCTAGGGACTTTTGCAGTTGATAAGGATTC
CACTCCGGAGAAACTTGTTTTCAACCGGACA
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