DR406179 | Citrus Genome Database

Overview


Name	DR406179
Unique Name	DR406179
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	745

Libraries


Library Name	Type
Mature Juice Sac from Navel Orange in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
DR406179_ssr44	microsatellite	DR406179_ssr44:44..58.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: ASNA_BOVIN (ATPase ASNA1 OS=Bos taurus GN=ASNA1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.390e-49
Identity = 91/188 (48.40%), Postives = 126/188 (67.02%), Query Frame = 2

Query:  104 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE---------EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDD 640
            E ++ NI+EQ SLKW+F           CS  L++ L++ R SVLIISTDPAHN+SDAF Q+F+K PT V G+ NL+AME+DPS+          EE         +  E  +A PGIDEAMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM  + G+ D
Sbjct:   25 EPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFDQKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDEAMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQMCNMLGLGD 212

HSP 2 Score: 31.187 bits (69), Expect = 7.390e-49
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 3

Query:  654 DALLGRLXXMKDVIERVNKQFKDPDLTTFV 743
            D L  +L     VI  V++QFKDP+ TTF+
Sbjct:  216 DQLASKLEETLPVIRSVSEQFKDPEQTTFI 245

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: ASNA_XENTR (ATPase asna1 OS=Xenopus tropicalis GN=asna1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.392e-49
Identity = 89/188 (47.34%), Postives = 126/188 (67.02%), Query Frame = 2

Query:  104 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPS---------VEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDD 640
            E ++ N+++Q SL+W+F           CS  L++ L+ VR SVLIISTDPAHN+SDAF Q+F+K PT V G+ NL+AME+DPS         + EE         +  E  +A PGIDEAMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM  + G+ D
Sbjct:   19 EPTLSNVIDQRSLRWIFVGGKGGVGKTTCSCSLAVQLSRVRESVLIISTDPAHNISDAFDQKFSKVPTKVRGYDNLFAMEIDPSLGVAELPDEIFEEDNMLSMGKKMMQEAMSAFPGIDEAMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQMCNMLGLGD 206

HSP 2 Score: 31.187 bits (69), Expect = 7.392e-49
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 3

Query:  654 DALLGRLXXMKDVIERVNKQFKDPDLTTFV 743
            D L  +L     VI  V++QFKDP+ TTF+
Sbjct:  210 DQLASKLEETLPVIRSVSEQFKDPEQTTFI 239

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: GET3_USTMA (ATPase GET3 OS=Ustilago maydis GN=GET3 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.394e-49
Identity = 94/182 (51.65%), Postives = 120/182 (65.93%), Query Frame = 2

Query:  104 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPS------VEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 631
            E +++NIL+Q +LKW+F            S  L+I L++VR SVL+ISTDPAHNLSDAF Q+F K  T VNGF NL AME+DP+      +E+       M S+  +LA AIPG+DEAM FAE++K V++M+YS IVFDTAPTGHTLR L FPS LEK L K  +L    G M+ Q   + G
Sbjct:   12 EPTLQNILDQKTLKWLFVGGKGGVGKTTTSCSLAIQLSKVRESVLLISTDPAHNLSDAFGQKFGKEATKVNGFDNLSAMEIDPNSSIQEMIEQSDSQGGAMGSMMQDLAFAIPGVDEAMGFAEIMKHVKSMEYSVIVFDTAPTGHTLRFLSFPSVLEKALAKFSTLGRSLGPMLGQFQSMLG 193

HSP 2 Score: 36.1946 bits (82), Expect = 7.394e-49
Identity = 15/31 (48.39%), Postives = 22/31 (70.97%), Query Frame = 3

Query:  651 EDALLGRLXXMKDVIERVNKQFKDPDLTTFV 743
            ++ +  +L  M++VI  VN QFKDP+ TTFV
Sbjct:  199 QEDMFAKLESMREVITEVNTQFKDPEKTTFV 229

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: ASNA_XENLA (ATPase asna1 OS=Xenopus laevis GN=asna1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.637e-48
Identity = 89/188 (47.34%), Postives = 126/188 (67.02%), Query Frame = 2

Query:  104 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPS---------VEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDD 640
            E ++ N+++Q SL+W+F           CS  L++ L+ VR SVLIISTDPAHN+SDAF Q+F+K PT V G+ NL+AME+DPS         + EE         +  E  +A PGIDEAMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM  + G+ D
Sbjct:   19 EPTLSNVIDQRSLRWIFVGGKGGVGKTTCSCSLAVQLSLVRDSVLIISTDPAHNISDAFDQKFSKVPTKVRGYDNLFAMEIDPSLGVAELPDEIFEEDNMLSMGKKMMQEAMSAFPGIDEAMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQMCNMLGLGD 206

HSP 2 Score: 31.187 bits (69), Expect = 1.637e-48
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 3

Query:  654 DALLGRLXXMKDVIERVNKQFKDPDLTTFV 743
            D L  +L     VI  V++QFKDP+ TTF+
Sbjct:  210 DQLASKLEETLPVIRSVSEQFKDPEQTTFI 239

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: GET3_SCLS1 (ATPase get3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=get3 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.637e-48
Identity = 95/178 (53.37%), Postives = 120/178 (67.42%), Query Frame = 2

Query:  104 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPS---------VEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMIN 610
            E ++++IL+Q SL+W+F            S  L+I LA+VR SVL+ISTDPAHNLSDAF Q+F K   L+NGF NL AME+DP+          EE  G   GM  +  +LA AIPGIDEAMSFAE+LK V+++ Y  I+FDTAPTGHTLR LQFP+ LEK L K+  L  +FG M+N
Sbjct:   14 EPTLQSILDQKSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLISTDPAHNLSDAFSQKFGKEARLINGFENLSAMEIDPNGSIQELMGQAEEGEGPAAGMGGMMQDLAFAIPGIDEAMSFAEVLKQVKSLSYETIIFDTAPTGHTLRFLQFPTVLEKALAKVSQLSTQFGPMLN 191

HSP 2 Score: 31.5722 bits (70), Expect = 1.637e-48
Identity = 13/28 (46.43%), Postives = 20/28 (71.43%), Query Frame = 3

Query:  660 LLGRLXXMKDVIERVNKQFKDPDLTTFV 743
            ++ +L  +++ I  VN QFKD +LTTFV
Sbjct:  209 MMEKLEGLRETISEVNGQFKDENLTTFV 236

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: GET3_BOTFB (ATPase get3 OS=Botryotinia fuckeliana (strain B05.10) GN=get3 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.637e-48
Identity = 95/178 (53.37%), Postives = 120/178 (67.42%), Query Frame = 2

Query:  104 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPS---------VEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMIN 610
            E ++++IL+Q SL+W+F            S  L+I LA+VR SVL+ISTDPAHNLSDAF Q+F K   L+NGF NL AME+DP+          EE  G   GM  +  +LA AIPGIDEAMSFAE+LK V+++ Y  I+FDTAPTGHTLR LQFP+ LEK L K+  L  +FG M+N
Sbjct:   14 EPTLQSILDQKSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLISTDPAHNLSDAFSQKFGKEARLINGFENLSAMEIDPNGSIQELMGQAEEGEGPAAGMGGMMQDLAFAIPGIDEAMSFAEVLKQVKSLSYETIIFDTAPTGHTLRFLQFPTVLEKALAKVSQLSTQFGPMLN 191

HSP 2 Score: 31.5722 bits (70), Expect = 1.637e-48
Identity = 13/28 (46.43%), Postives = 20/28 (71.43%), Query Frame = 3

Query:  660 LLGRLXXMKDVIERVNKQFKDPDLTTFV 743
            ++ +L  +++ I  VN QFKD +LTTFV
Sbjct:  209 MMEKLEGLRETISEVNGQFKDENLTTFV 236

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: GET3_CRYNE (ATPase GET3 OS=Cryptococcus neoformans GN=GET3 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.528e-48
Identity = 101/185 (54.59%), Postives = 127/185 (68.65%), Query Frame = 2

Query:   92 LEIPEGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPS-----VEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 631
            LE  + +++NIL+Q SLKW+F            S  L++ LA  R SVL+ISTDPAHNLSDAF Q+F K  T VNGF NLYAME+DP+     + E +  T GM  +  +LA AIPG+DEAM FAE++K V++M++S IVFDTAPTGHTLR L FPS LEK L K+ +L  KFG MI QM  +FG
Sbjct:    4 LEPLDPTLQNILDQKSLKWIFCGGKGGVGKTTTSCSLAVQLAACRESVLLISTDPAHNLSDAFSQKFGKDATKVNGFDNLYAMEIDPNGSLQEMIESSDQTGGMGGMMQDLAFAIPGVDEAMGFAEIMKHVKSMEFSVIVFDTAPTGHTLRFLSFPSVLEKALGKLSTLGGKFGPMIQQMQSMFG 188

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: GET3_UNCRE (ATPase GET3 OS=Uncinocarpus reesii (strain UAMH 1704) GN=GET3 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.781e-48
Identity = 94/184 (51.09%), Postives = 125/184 (67.93%), Query Frame = 2

Query:   95 EIPEGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE----TGSTE------GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 616
            +I E +++NIL+Q SL+W+F            S  L+I LA+VR SVL+ISTDPAHNLSDAF Q+F K   L++GF NL AME+DPS   +     G  +      G+  +  +LA +IPG+DEAMSFAE+LK V+++ Y  IVFDTAPTGHTLR LQFP+ LEKGL K+  L ++FG M+N +
Sbjct:   10 DILEPTLQNILDQKSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLIDGFDNLSAMEIDPSASMQDLMAAGGDQAEDMGFGLGGMMQDLAFSIPGVDEAMSFAEVLKQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKGLAKLSQLSSQFGPMLNSV 193

HSP 2 Score: 33.8834 bits (76), Expect = 2.781e-48
Identity = 14/30 (46.67%), Postives = 21/30 (70.00%), Query Frame = 3

Query:  654 DALLGRLXXMKDVIERVNKQFKDPDLTTFV 743
            D +L ++  +++ I  VN QFK+ DLTTFV
Sbjct:  207 DDVLSKMESLRETISEVNTQFKNADLTTFV 236

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: GET3_NEOFI (ATPase get3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=get3 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.723e-48
Identity = 93/186 (50.00%), Postives = 127/186 (68.28%), Query Frame = 2

Query:   95 EIPEGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTE----------GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 616
            ++ E ++++IL Q +L+W+F            S  L+I LA+VR SVL+ISTDPAHNLSDAF Q+F K   LV+G+SNL AME+DP  S+++   S E          GM ++  +LA +IPG+DEAMSFAE+LK V+++ Y  IVFDTAPTGHTLR LQFP+ LEK L K+  L ++FG M+N +
Sbjct:   11 DLMEPTLQSILSQKTLRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDGYSNLSAMEIDPNGSIQDLLASGESQGDDPMAGLGMGNMMQDLAFSIPGVDEAMSFAEVLKQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSI 196

HSP 2 Score: 36.965 bits (84), Expect = 4.723e-48
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3

Query:  654 DALLGRLXXMKDVIERVNKQFKDPDLTTFV 743
            D LL ++  +++ I  VN QFK+PD+TTFV
Sbjct:  210 DELLQKMESLRETISEVNTQFKNPDMTTFV 239

[Close]

BLAST of DR406179 vs. ExPASy Swiss-Prot
Match: GET3_ASPFU (ATPase get3 OS=Aspergillus fumigatus GN=get3 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.046e-47
Identity = 92/186 (49.46%), Postives = 127/186 (68.28%), Query Frame = 2

Query:   95 EIPEGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTE----------GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 616
            ++ E ++++IL Q +L+W+F            S  L+I LA+VR SVL+ISTDPAHNLSDAF Q+F K   LV+G+SNL AME+DP  S+++   S +          GM ++  +LA +IPG+DEAMSFAE+LK V+++ Y  IVFDTAPTGHTLR LQFP+ LEK L K+  L ++FG M+N +
Sbjct:   11 DLMEPTLQSILSQKTLRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKFGKEARLVDGYSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMGNMMQDLAFSIPGVDEAMSFAEVLKQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSI 196

HSP 2 Score: 36.965 bits (84), Expect = 1.046e-47
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 3

Query:  654 DALLGRLXXMKDVIERVNKQFKDPDLTTFV 743
            D LL ++  +++ I  VN QFK+PD+TTFV
Sbjct:  210 DELLQKMESLRETISEVNTQFKNPDMTTFV 239

The following BLAST results are available for this feature:

BLAST of DR406179 vs. ExPASy Swiss-Prot

BLAST of DR406179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111


Match Name	E-value	Identity	Description
ASNA_BOVIN	7.390e-49	48.40	ATPase ASNA1 OS=Bos taurus GN=ASNA1 PE=2 SV=1	[more]
ASNA_XENTR	7.392e-49	47.34	ATPase asna1 OS=Xenopus tropicalis GN=asna1 PE=2 S...	[more]
GET3_USTMA	7.394e-49	51.65	ATPase GET3 OS=Ustilago maydis GN=GET3 PE=3 SV=1	[more]
ASNA_XENLA	1.637e-48	47.34	ATPase asna1 OS=Xenopus laevis GN=asna1 PE=2 SV=1	[more]
GET3_SCLS1	1.637e-48	53.37	ATPase get3 OS=Sclerotinia sclerotiorum (strain AT...	[more]
GET3_BOTFB	1.637e-48	53.37	ATPase get3 OS=Botryotinia fuckeliana (strain B05....	[more]
GET3_CRYNE	2.528e-48	54.59	ATPase GET3 OS=Cryptococcus neoformans GN=GET3 PE=...	[more]
GET3_UNCRE	2.781e-48	51.09	ATPase GET3 OS=Uncinocarpus reesii (strain UAMH 17...	[more]
GET3_NEOFI	4.723e-48	50.00	ATPase get3 OS=Neosartorya fischeri (strain ATCC 1...	[more]
GET3_ASPFU	1.046e-47	49.46	ATPase get3 OS=Aspergillus fumigatus GN=get3 PE=1 ...	[more]

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Properties


Property Name	Value
Genbank description	CSAJ-PNP1248P22 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248P22 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR406179 ID=DR406179; Name=DR406179; organism=Citrus sinensis; type=EST; length=745bp
GGGGAGAGAACAAGAGGCAGTGAGTGAGTTGAAAAAGAGGGAAAAAAGAA
AAGAAAAGATGACGGAGGAGGATCAAGATCAAGATCAAGAATTAGAAATT
CCAGAGGGCAGTGTACGGAATATACTAGAACAAGATAGTCTCAAGTGGGT
CTTCGTCGGAGGCAAAGGCGGCGTTGGCAAAACGACATGTAGTTCAATTC
TCTCGATCCTTTTGGCCGAGGTCCGACCTTCTGTCTTGATCATATCCACT
GACCCAGCTCACAATCTCAGCGATGCTTTTCAGCAACGCTTCACCAAAAC
ACCTACTTTAGTCAATGGTTTCTCCAATCTTTATGCCATGGAGGTGGATC
CTAGTGTCGAAGAAGAAACGGGTTCTACCGAGGGAATGGATAGCTTGTTT
TCTGAGCTAGCAAATGCTATTCCCGGTATTGATGAGGCAATGAGCTTTGC
GGAGATGCTCAAATTGGTGCAAACAATGGATTATTCTTGTATAGTATTTG
ATACAGCTCCAACTGGCCATACACTCCGGCTATTACAATTTCCTTCAACC
TTAGAGAAGGGGCTAGACAAAATGATGTCCTTGAAAAATAAATTTGGCGG
CATGATTAATCAGATGACCCGTCTCTTTGGAATTGATGATGANATTTGGG
GAGGATGCTCTCTTAGGAAGGCTTGNNNGNATGAAAGATGTGATTGAACG
AGTTAATAAGCAGTTCAAGGACCCAGACTTGACAACCTTTGTCTG