DR406162

Overview
NameDR406162
Unique NameDR406162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8502 contig Csv1_Contig8502:412..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406162 vs. ExPASy Swiss-Prot
Match: IOLC_CLOBB (5-dehydro-2-deoxygluconokinase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=iolC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.320e-12
Identity = 56/246 (22.76%), Postives = 111/246 (45.12%), Query Frame = 1
Query:   22 GVSADGINF-DQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHP-NLKLLLVTLGEHGCRYYT---KSFRGAVDAFHVNAVDTTGAGDAFVGTLLGKLVDDQSVLEDEPRLREILKFANACGAITTTKKGAIPALPTESE 735
            G+    I + + G    L F  + +  E   + YRN  AD+ L  +E++ E I++ K       +L   P R A L+A++ AK+   ++ +D + R   W + +E       +  +++++  S  E   +E L   +K  DE +   W     K++++  G+ G   YT   KS++  +  F V  + + G GDA+    +  ++++  ++       + L+F +A  A+          +PT  E
Sbjct:   84 GIDTSQIKYAENGESLGLTFTEIASPTESSILMYRNGIADLELDVNEIDEEYIKNTKAIVISGTALAKSPSREAALKALELAKKNDTIVIFDVDYREYNWKNKDEIAIYYSIVGKQSDIVMGSREEFDLMESLIVKEKSTDEESAKRWLGFGNKIVVIKHGKEGSTAYTNDRKSYK--IKPFPVKLLKSFGGGDAYASAFIYGILEEWDIM-------DALEFGSASAAMLVASHSCSEDMPTVKE 320          
BLAST of DR406162 vs. ExPASy Swiss-Prot
Match: IOLC_CLOBA (5-dehydro-2-deoxygluconokinase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=iolC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 56/246 (22.76%), Postives = 111/246 (45.12%), Query Frame = 1
Query:   22 GVSADGINF-DQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVE---LEFLTGSDKIDDESALSLWHP-NLKLLLVTLGEHGCRYYT---KSFRGAVDAFHVNAVDTTGAGDAFVGTLLGKLVDDQSVLEDEPRLREILKFANACGAITTTKKGAIPALPTESE 735
            G+    I + + G    L F  + +  E   + YRN  AD+ L  +E++ E I++ K       +L   P R A L+A++ AK+   ++ +D + R   W + +E       +  +++++  S  E   +E L   +K  DE +   W     K++++  G+ G   YT   KS++  +  F V  + + G GDA+    +  ++++  ++       + L+F +A  A+          +PT  E
Sbjct:   84 GIDTSQIKYAENGESLGLTFTEIASPTESSILMYRNGIADLELDVNEIDEEYIKNTKAIVISGTALAKSPSREAALKALELAKKNDTVVIFDVDYREYNWKNKDEIAIYYSIVGKQSDIVMGSREEFDLMESLIVKEKSTDEESAKRWLGFGNKIVVIKHGKEGSTAYTNDGKSYK--IKPFPVKLLKSFGGGDAYASAFIYGILEEWDIM-------DALEFGSASAAMLVASHSCSEDMPTVKE 320          
BLAST of DR406162 vs. ExPASy Swiss-Prot
Match: KDGK_BACSU (2-dehydro-3-deoxygluconokinase OS=Bacillus subtilis GN=kdgK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 64/253 (25.30%), Postives = 104/253 (41.11%), Query Frame = 1
Query:   10 LKENGVSADGINFDQGAR-TALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLE-----AMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFRGAVDAFHVN-AVDTTGAGDAFVGTLLGKLVDDQSVLEDEPRLREILKFANACGAITTTKKGAIPALPTESEALNY 747
            LK+ GV    +   Q    T L   +   +G+ +  +YR  SA   L   E   +  + A   H   I     P  SA ++      M   + AG  +S+DPN+R  LWP        I  +   A+       E E LTG +K  +  A          + + LG+ G  + T +  G ++   V+  VDT GAGD F   ++  ++D  S        ++ ++  NA GA+     G +  LPT  +  ++
Sbjct:   70 LKKEGVDVSRVIRSQDENPTGLLLKSKVKEGDPQVTYYRKNSAASTLTTAEYPRDYFQCAGHLHVTGIP----PALSAEMKDFTYHVMNDMRNAGKTISFDPNVRPSLWPDQATMVHTINDLAGLADWFFPGIAEGELLTG-EKTPEGIADYYLKKGASFVAIKLGKEGAYFKTGTSEGFLEGCRVDRVVDTVGAGDGFAVGVISGILDGLS-------YKDAVQRGNAIGALQVQAPGDMDGLPTREKLASF 310          
The following BLAST results are available for this feature:
BLAST of DR406162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
IOLC_CLOBB1.320e-1222.765-dehydro-2-deoxygluconokinase OS=Clostridium botu... [more]
IOLC_CLOBA1.724e-1222.765-dehydro-2-deoxygluconokinase OS=Clostridium botu... [more]
KDGK_BACSU2.490e-1125.302-dehydro-3-deoxygluconokinase OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248O19 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248O19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406162 ID=DR406162; Name=DR406162; organism=Citrus sinensis; type=EST; length=749bp
GGGGGGATCTTGAAGGAGAACGGAGTCAGCGCTGACGGCATCAACTTTGA
CCAGGGTGCCAGAACTGCCCTTGCATTCGTGACCCTGCGGGCTGACGGCG
AGCGCGAGTTCATGTTTTACAGAAACCCCAGCGCTGATATGCTCTTGAGA
CCCGACGAGCTTAATCTTGAGCTGATCAGATCTGCCAAAGTTTTCCACTA
TGGGTCAATAAGCCTGATAGTGGAGCCATGCCGATCAGCGCACTTGGAGG
CAATGAAAGCAGCCAAGGAAGCAGGAGCCCTTCTCTCATACGACCCCAAC
CTCCGGCTACCGTTGTGGCCCTCGCCGGAGGAGGCGCGCGAGCAGATAAT
GAGCATCTGGGACAAGGCCGAGGTAATCAAAGTCAGTGATGTGGAGCTTG
AATTCCTCACCGGGAGTGACAAGATTGATGATGAATCAGCATTGTCGCTT
TGGCATCCCAACTTGAAACTCCTTTTGGTCACCCTTGGTGAGCATGGCTG
CAGATACTACACCAAGAGTTTCAGAGGAGCAGTGGATGCTTTTCATGTGA
ACGCAGTAGATACAACCGGCGCTGGTGATGCATTTGTTGGTACTCTTTTA
GGGAAGCTTGTTGATGACCAATCTGTTCTTGAGGATGAACCAAGGTTGCG
GGAGATATTGAAATTTGCAAATGCCTGTGGAGCCATCACTACCACCAAGA
AGGGAGCAATTCCAGCTCTACCCACAGAGTCTGAAGCTCTCAACTACTC
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