DR406123

Overview
NameDR406123
Unique NameDR406123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2589 contig Csv1_Contig2589:432..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.438e-11
Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:  172 VDILLAVILPPLGVFLKFGCKAEFWVCLLLTILGHIPGIIYAVYAITK 315
            +++L A+ +PP+GVFL++G   EFWVCLLLT+   IPG+IYA+Y +TK
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52
[Close]
BLAST of DR406123 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:  157 STATCVDILLAVILPPLGVFLKFGC-KAEFWVCLLLTILGHIPGIIYAVYAI 309
            S   C +I +A++LPP+GV L+ GC   EF++CL+LT LG++PGIIYA+YAI
Sbjct:    4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55
The following BLAST results are available for this feature:
BLAST of DR406123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RC21_ARATH1.438e-1156.25UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
RC22_ARATH9.324e-1155.77UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248M20 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248M20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406123 ID=DR406123; Name=DR406123; organism=Citrus sinensis; type=EST; length=640bp
CGGCGCGCGGGAAAACAAAAATACCAAGTNNNANNNNNNAAAGCAGTTAC
TCAAAACCTTAAACACTTCTTTAATCAAAGTTCTTGTTTTTTGACTCTAA
ATTTTATTTTATTCCATTTTACACTTTTTAAGAATCAATCAAAGATGGCA
GATGGAAGCACAGCAACATGCGTAGATATTCTCTTGGCTGTTATCTTGCC
TCCTCTTGGTGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGGTCT
GTTTGCTCTTGACAATTCTGGGGCATATCCCTGGAATTATTTATGCTGTT
TATGCCATCACCAAGAAGTGATCTCTCTTCTTCATCTATTGAGAGATCCC
AAGGGCATCATGTGTTTATGAGATCTTTTATTTACAACCGTTTGATGGAC
AGCTCTGATTTGATGTAGCCAGATGGGTTCTGATTCTTAATCAACTGGGG
TGTGCGTGTGTGTGGGAGAGAGCACTTGTTTCGTTTGTTAATCTTTGTCG
TTTTGTTTTCTTTAATTTGTCCTTTTTAATGAATTTTAATTCAATATGTT
GATGTAAAGTGGAGTATTATTGAGTGTGTAAATTGCCTTGTGAATCATTA
CAAGTCCCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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