DR406122

Overview
NameDR406122
Unique NameDR406122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1975 contig Csv1_Contig1975:1..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406122 vs. ExPASy Swiss-Prot
Match: MCFR_DICDI (Mitochondrial substrate carrier family protein R OS=Dictyostelium discoideum GN=mcfR PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.813e-12
Identity = 44/137 (32.12%), Postives = 66/137 (48.18%), Query Frame = 3
Query:  288 SSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 698
            +S +V  L GGVS  ++K+  AP+ERVK+L Q + +M       + +  +       +K+EG+  LW+GNTA ++R FP  A+ +   DY K   NF  D+    + F                  Y LD  R RLA
Sbjct:    9 TSPMVTLLAGGVSGVIAKSTIAPLERVKILYQVKSKM-------YSFNSVYGLMKNIIKNEGLAGLWKGNTATILRIFPYSAIQWTSYDYLKN--NFVTDKKSSVQIFIAG----SLGFSCAILLTYPLDVIRARLA 132          
BLAST of DR406122 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 3
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 698
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGS--KSAKMN-----IYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSG----SMAGATAQTFIYPMEVLKTRLA 317          
BLAST of DR406122 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 3
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 698
            FW  S G  +     +   F +   EK    +    L GG++ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGS--KSDKMN-----IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA 317          
BLAST of DR406122 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 48/166 (28.92%), Postives = 80/166 (48.19%), Query Frame = 3
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 698
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q     +   +  + + G    F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFISG----SMAGATAQTFIYPMEVLKTRLA 315          
BLAST of DR406122 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.191e-11
Identity = 44/166 (26.51%), Postives = 80/166 (48.19%), Query Frame = 3
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 698
            FW  S G  +     +   F +   E+    +    L GG++ AVS+T+ AP++R+K+++Q     +   +  + + G    F + +K+ G+ SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--EERKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA 315          
The following BLAST results are available for this feature:
BLAST of DR406122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MCFR_DICDI3.813e-1232.12Mitochondrial substrate carrier family protein R O... [more]
SCMC1_BOVIN4.980e-1230.12Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN8.495e-1229.52Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE2.472e-1128.92Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT7.191e-1126.51Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248M18 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248M18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406122 ID=DR406122; Name=DR406122; organism=Citrus sinensis; type=EST; length=748bp
GGGGACATTACGGAGGTCTCACACCAGGCGACCTTCTCAGGTCACCATCT
TCAGCTGCAAACATGGCAGATGGATCGTATCCATCCGTATTTCAGAAAAT
GCAAGGCCAGTCATACTTCATTTCTGGGGTCTCCCCCAATTTGTATGCCC
ACAACTACAGTGTGGCAGGTTCCTTTGTTAATAGAGGATCACAGAATTCT
TTTTGGGCAGCAAGTCAGGGAACTGGCCTGGCACTTGTGTCTCCTGTTTC
TCCTATATTCGTACAAGCTCCATCAGAAAAAAGTCTTTCTTCTTTTTTGG
TGGATTTTCTCATGGGAGGAGTTTCAGCAGCTGTTTCCAAGACTGCAGCT
GCTCCTATTGAGCGGGTTAAGCTTTTGATTCAGAATCAAGATGAGATGAT
CAAGAGTGGTCGGCTCTCGCATCCGTACAAGGGGATTTCTGATTGCTTTG
GCAGAACTGTTAAGGATGAAGGCATACTATCTCTTTGGAGAGGCAACACT
GCCAATGTTATCAGATACTTCCCTACCCAGGCCCTGAACTTTGCATTCAA
GGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAGACAGAGATGGCTACT
GGAAGTGGTTTGCTGGGAACTTGGCATCTGGTGGGGCTGCTGGTGCTTCA
TCGCTTCTTTTTGTGTATTCGCTTGACTATGCAAGAACACGTTTGGCAAA
TGATGCTAAGGCAGCTAAAAAGGGTGGGGAAAGGCAGTTTAATGGTTT
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