DR406071

Overview
NameDR406071
Unique NameDR406071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR406071_ssr196 microsatellite DR406071_ssr196:196..207. BLAST: Citrus ESTs to Prunus persica proteins V1
DR406071_ssr107 microsatellite DR406071_ssr107:107..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DR406071 vs. ExPASy Swiss-Prot
Match: RS25B_YEAST (40S ribosomal protein S25-B OS=Saccharomyces cerevisiae GN=RPS25B PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  249 VLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRA 443
            V+ DQ  YD++L E P Y+ ++ S+L DRL+I GSLAR A+R L   G+I+ +S H+ Q IYTRA
Sbjct:   40 VILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRA 104          
BLAST of DR406071 vs. ExPASy Swiss-Prot
Match: RS25_CANGA (40S ribosomal protein S25 OS=Candida glabrata GN=RPS25 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  249 VLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 446
            V+ DQ  +D++L E P Y+ ++ S+L DRL+I GS+AR A+R L   G+I+ +S H+ Q IYTRA+
Sbjct:   40 VILDQEKFDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLEREGIIKPISKHSKQAIYTRAS 105          
BLAST of DR406071 vs. ExPASy Swiss-Prot
Match: RS25_ASHGO (40S ribosomal protein S25 OS=Ashbya gossypii GN=RPS25 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 3
Query:  249 VLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 446
            V+ DQ   D++L E P Y+ ++ S+L DRL+I GS+AR A+R L   G+I+ +S H+ Q IYTRAT
Sbjct:   40 VILDQDKLDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLETEGIIKPISKHSKQAIYTRAT 105          
BLAST of DR406071 vs. ExPASy Swiss-Prot
Match: RS25B_SCHPO (40S ribosomal protein S25-B OS=Schizosaccharomyces pombe GN=rps25b PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  252 LFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRA 443
            +FD++  D++  E P +K I+ S+L DR++INGSLAR AIR+L  RG+I+ V  H+ Q IYTRA
Sbjct:   21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRA 84          
BLAST of DR406071 vs. ExPASy Swiss-Prot
Match: RS25A_SCHPO (40S ribosomal protein S25-A OS=Schizosaccharomyces pombe GN=rps25a PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  252 LFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTR 440
            +FD++  D++  E P +K I+ S+L DR++INGSLAR AIR+L  RG+I+ V  H+ Q IYTR
Sbjct:   21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83          
The following BLAST results are available for this feature:
BLAST of DR406071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS25B_YEAST2.697e-1250.7740S ribosomal protein S25-B OS=Saccharomyces cerev... [more]
RS25_CANGA7.848e-1246.9740S ribosomal protein S25 OS=Candida glabrata GN=R... [more]
RS25_ASHGO7.848e-1248.4840S ribosomal protein S25 OS=Ashbya gossypii GN=RP... [more]
RS25B_SCHPO1.025e-1151.5640S ribosomal protein S25-B OS=Schizosaccharomyces... [more]
RS25A_SCHPO2.982e-1150.7940S ribosomal protein S25-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248K04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248K04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406071 ID=DR406071; Name=DR406071; organism=Citrus sinensis; type=EST; length=621bp
GGGGAACTTAAAACGAATCCATTCTATGACCTAGGGTTAGATAACACCCA
CTCCGCCCGCCTCGCCTCTCTTCCCACATCTCACTTTCGTTTCAGAGCTC
TCCACTTCTGTCTGTCTGATCAGATCCAATGGCTCCAAAGAAGGACAAGG
CTCCCCCTCCATCCTCAAAGCCTGTGAAATCCGGAGGCGGCAAGCAGAAG
AAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAAGTGAACAACATGGT
GTTGTTTGATCAGGCAACCTATGACAAGCTTCTGTCCGAGGCTCCTAAAT
ACAAGCTTATCACTCCTTCCATTCTCTCCGATCGTCTAAGGATTAATGGA
TCGCTTGCAAGGAAGGCAATAAGAGAGCTTATGGCTAGAGGTTTGATCAG
GATGGTGTCTGCTCACGCAAGCCAGCAGATTTACACTAGGGCAACCAACA
CCTAAGTCTCTTTTGATATTTGCTTCTTAGTTTATATGTAGTTTCGTTCT
GCCGTGTTTTGACTGCTATTATTTTTGTTTCTTGTGAATCTATTTGAGAG
TGTACAAGTATAATTTAGAGTTTTATTTACATTTCTTGTCTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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