DR406026

Overview
NameDR406026
Unique NameDR406026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ATRBE (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna GN=rpoB PE=3 SV=1)

HSP 1 Score: 424.861 bits (1091), Expect = 1.910e-118
Identity = 208/221 (94.12%), Postives = 213/221 (96.38%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIVMLGSWVETGDILVGKLTPQ  KESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QK+GGSSYNPETI VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTG+PF
Sbjct:  716 LLRNLDKNGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKRGGSSYNPETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPF 936
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SPIOL (DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea GN=rpoB PE=3 SV=1)

HSP 1 Score: 424.476 bits (1090), Expect = 2.495e-118
Identity = 208/221 (94.12%), Postives = 213/221 (96.38%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIV LGSWVETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QKKGGSSYNPETI VYI QKREIKVGDKVAGRHGNKGI+S+IL RQDMPYLQDGRPVDM+FNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  716 LLRNLDKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIHVYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 936
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_NICTO (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE=3 SV=1)

HSP 1 Score: 423.32 bits (1087), Expect = 5.559e-118
Identity = 208/221 (94.12%), Postives = 213/221 (96.38%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIVMLGSWVETGDILVGKLTPQ  KESSYAPEDRLLRAIL IQVST KETCLKL IGGRGRVIDVRW+QK+GGSSYNPETI VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTG+PF
Sbjct:  716 LLRNLDKNGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLLIGGRGRVIDVRWIQKRGGSSYNPETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPF 936
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_POPTR (DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa GN=rpoB PE=3 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 7.260e-118
Identity = 206/221 (93.21%), Postives = 211/221 (95.48%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIVMLGSWVETGDIL+GKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLP GGRGRVIDVRW+QKKGGSSYNPETI VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYR+APFDERYEQEASRKLVFSELYEA KQT NPWVFEPE PGKSRIFDGRTGDPF
Sbjct:  716 LLRNLDKNGIVMLGSWVETGDILIGKLTPQLAKESSYAPEDRLLRAILGIQVSTSKETCLKLPTGGRGRVIDVRWIQKKGGSSYNPETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGAPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRVAPFDERYEQEASRKLVFSELYEAGKQTGNPWVFEPECPGKSRIFDGRTGDPF 936
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_POPAL (DNA-directed RNA polymerase subunit beta OS=Populus alba GN=rpoB PE=3 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 7.260e-118
Identity = 207/221 (93.67%), Postives = 211/221 (95.48%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIVMLGSWVETGDIL+GKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLP GGRGRVIDVRW+QKKGGSSYNPETI VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LL RHYR+APFDERYEQEASRKLVFSELYEA KQTANPWVFEPE PGKSRIFDGRTGDPF
Sbjct:  716 LLRNLDKNGIVMLGSWVETGDILIGKLTPQLAKESSYAPEDRLLRAILGIQVSTSKETCLKLPTGGRGRVIDVRWIQKKGGSSYNPETIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGGPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLARHYRVAPFDERYEQEASRKLVFSELYEAGKQTANPWVFEPECPGKSRIFDGRTGDPF 936
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SOLTU (DNA-directed RNA polymerase subunit beta OS=Solanum tuberosum GN=rpoB PE=3 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 9.481e-118
Identity = 207/221 (93.67%), Postives = 212/221 (95.93%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDK GIVMLGSWVETGDILVGKLTPQ  KESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QK+GGSSYNPETI VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTG+PF
Sbjct:  716 LLRNLDKKGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKRGGSSYNPETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPF 936
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SOLLC (DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum GN=rpoB PE=3 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 9.481e-118
Identity = 207/221 (93.67%), Postives = 212/221 (95.93%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDK GIVMLGSWVETGDILVGKLTPQ  KESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QK+GGSSYNPETI VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTG+PF
Sbjct:  716 LLRNLDKKGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKRGGSSYNPETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPF 936
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SOLBU (DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum GN=rpoB PE=3 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 9.481e-118
Identity = 207/221 (93.67%), Postives = 212/221 (95.93%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDK GIVMLGSWVETGDILVGKLTPQ  KESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QK+GGSSYNPETI VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTG+PF
Sbjct:  716 LLRNLDKKGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKRGGSSYNPETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGNPF 936
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_LIRTU (DNA-directed RNA polymerase subunit beta OS=Liriodendron tulipifera GN=rpoB PE=3 SV=2)

HSP 1 Score: 421.779 bits (1083), Expect = 1.617e-117
Identity = 207/221 (93.67%), Postives = 211/221 (95.48%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNGIVMLGSW+ETGDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELY ASKQTANPWVFEPE PGKSRIFDGRTGDPF
Sbjct:  716 LLRNLDKNGIVMLGSWIETGDILVGKLTPQTAKESSYAPEDRLLRAILGIQVSTAKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYSASKQTANPWVFEPECPGKSRIFDGRTGDPF 936
[Close]
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_LEMMI (DNA-directed RNA polymerase subunit beta OS=Lemna minor GN=rpoB PE=3 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 2.112e-117
Identity = 207/221 (93.67%), Postives = 211/221 (95.48%), Query Frame = 2 
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NGIVMLGSWVETGDILVGKLTPQ A ESSYAPEDRLLRAIL IQVST KET LKLPIGGRGRVIDVRW+QKKGGSSYNPE I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LLNRHYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKS+IFDGRTGDPF
Sbjct:  718 LLRNLDRNGIVMLGSWVETGDILVGKLTPQIANESSYAPEDRLLRAILGIQVSTAKETSLKLPIGGRGRVIDVRWIQKKGGSSYNPEIIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSKIFDGRTGDPF 938
The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOB_ATRBE1.910e-11894.12DNA-directed RNA polymerase subunit beta OS=Atropa... [more]
RPOB_SPIOL2.495e-11894.12DNA-directed RNA polymerase subunit beta OS=Spinac... [more]
RPOB_NICTO5.559e-11894.12DNA-directed RNA polymerase subunit beta OS=Nicoti... [more]
RPOB_POPTR7.260e-11893.21DNA-directed RNA polymerase subunit beta OS=Populu... [more]
RPOB_POPAL7.260e-11893.67DNA-directed RNA polymerase subunit beta OS=Populu... [more]
RPOB_SOLTU9.481e-11893.67DNA-directed RNA polymerase subunit beta OS=Solanu... [more]
RPOB_SOLLC9.481e-11893.67DNA-directed RNA polymerase subunit beta OS=Solanu... [more]
RPOB_SOLBU9.481e-11893.67DNA-directed RNA polymerase subunit beta OS=Solanu... [more]
RPOB_LIRTU1.617e-11793.67DNA-directed RNA polymerase subunit beta OS=Liriod... [more]
RPOB_LEMMI2.112e-11793.67DNA-directed RNA polymerase subunit beta OS=Lemna ... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248H24 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248H24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bp
GGGCCGGTTACTCCGCAATTTAGACAAAAATGGAATTGTGATGCTGGGAT
CTTGGGTAGAGACCGGCGATATTTTAGTAGGTAAATTAACGCCTCAGGCG
GCGAAAGAATCATCGTATGCTCCGGAAGATAGATTATTACGGGCCATACT
TGACATTCAGGTATCCACTCCAAAGGAAACTTGCCTAAAACTACCTATAG
GTGGTAGGGGTCGCGTTATTGATGTGAGATGGGTCCAGAAAAAGGGGGGT
TCTAGTTATAATCCAGAAACGATTTGTGTATATATTTTACAGAAACGTGA
AATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCG
TTTCAAAAATTTTGCCTAGACAGGATATGCCTTATTTGCAAGATGGAAGG
CCTGTTGATATGGTTTTCAACCCACTAGGAGTACCCTCGCGAATGAATGT
AGGACAGATATTTGAATGCTCGCTCGGGTTAGCGGGGGGTCTGCTAAATC
GACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCG
AGAAAACTCGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACCGCGAA
TCCATGGGTATTTGAGCCGGAATACCCGGGAAAAAGCAGAATATTTGATG
GACGAACGGGAGATCCTTTTG
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