DR406026 | Citrus Genome Database

Overview


Name	DR406026
Unique Name	DR406026
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	671

Libraries


Library Name	Type
Mature Juice Sac from Navel Orange in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3949	contig	Csv1_Contig3949:517..1187.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ANASK (DNA-directed RNA polymerase subunit beta OS=Anaeromyxobacter sp. (strain K) GN=rpoB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLA 484
            VY+  KR++ VGDK+AGRHGNKG+VS++LP +D+PYL+DG PVD+V NPLGVPSRMNVGQI E  LG A
Sbjct: 1096 VYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWA 1164

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ANADE (DNA-directed RNA polymerase subunit beta OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rpoB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLA 484
            VY+  KR++ VGDK+AGRHGNKG+VS++LP +D+PYL+DG PVD+V NPLGVPSRMNVGQI E  LG A
Sbjct: 1096 VYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWA 1164

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ANAD2 (DNA-directed RNA polymerase subunit beta OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rpoB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLA 484
            VY+  KR++ VGDK+AGRHGNKG+VS++LP +D+PYL+DG PVD+V NPLGVPSRMNVGQI E  LG A
Sbjct: 1096 VYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGWA 1164

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOBC_HELPY (Bifunctional DNA-directed RNA polymerase subunit beta-beta' OS=Helicobacter pylori GN=rpoBC PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 487
            +YI  KR++KVGDK+AGRHGNKGIVS I+P  DMPY  DG PVD+V NPLGVPSRMN+GQI E  LGL G
Sbjct: 1080 LYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVG 1149

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOBC_HELPS (Bifunctional DNA-directed RNA polymerase subunit beta-beta' OS=Helicobacter pylori (strain Shi470) GN=rpoBC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 487
            +YI  KR++KVGDK+AGRHGNKGIVS I+P  DMPY  DG PVD+V NPLGVPSRMN+GQI E  LGL G
Sbjct: 1080 LYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVG 1149

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOBC_HELPJ (Bifunctional DNA-directed RNA polymerase subunit beta-beta' OS=Helicobacter pylori J99 GN=rpoBC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 487
            +YI  KR++KVGDK+AGRHGNKGIVS I+P  DMPY  DG PVD+V NPLGVPSRMN+GQI E  LGL G
Sbjct: 1080 LYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVG 1149

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOBC_HELPH (Bifunctional DNA-directed RNA polymerase subunit beta-beta' OS=Helicobacter pylori (strain HPAG1) GN=rpoBC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 487
            +YI  KR++KVGDK+AGRHGNKGIVS I+P  DMPY  DG PVD+V NPLGVPSRMN+GQI E  LGL G
Sbjct: 1080 LYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVG 1149

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOBC_HELAH (Bifunctional DNA-directed RNA polymerase subunit beta-beta' OS=Helicobacter acinonychis (strain Sheeba) GN=rpoBC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG 487
            +YI  KR++KVGDK+AGRHGNKGIVS I+P  DMPY  DG PVD+V NPLGVPSRMN+GQI E  LGL G
Sbjct: 1080 LYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVG 1149

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ZYMMO (DNA-directed RNA polymerase subunit beta OS=Zymomonas mobilis GN=rpoB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASR 553
            V++  KR+++ GDK+AGRHGNKG++S+ILP +DMP+L DG PVD+V NPLGVPSRMN+GQIFE  LG A   L    R A  +E  E  A R
Sbjct: 1088 VFVAVKRKLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDIVLNPLGVPSRMNIGQIFETHLGWAARGLGAKVRTA-LEEWREANADR 1178

HSP 2 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 2

Query:   11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKG 247
            LRNLD+ GIV +G+ V+ GDILVGK+TP+   ES   PE++LLRAI   + S  ++T L+LP G  G ++DVR   + G
Sbjct:  884 LRNLDEAGIVYIGAEVQPGDILVGKITPKG--ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHG 960

[Close]

BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_SPHWW (DNA-directed RNA polymerase subunit beta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpoB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 47/69 (68.12%), Postives = 61/69 (88.41%), Query Frame = 2

Query:  278 VYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLA 484
            V++  KR+++ GDK+AGRHGNKG++S+ILP++DMP+L+DG PVD+V NPLGVPSRMNVGQIFE  LG A
Sbjct: 1144 VFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQIFETHLGWA 1212

HSP 2 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2

Query:   11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKG 247
            LRNLD+ GIV +G+ VE GDIL GK+TP+   ES   PE++LLRAI   + S  ++T L+LP G  G V+DVR   + G
Sbjct:  941 LRNLDEAGIVYIGAEVEPGDILCGKITPKG--ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHG 1017

The following BLAST results are available for this feature:

BLAST of DR406026 vs. ExPASy Swiss-Prot

BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RPOB_ANASK	5.169e-23	69.57	DNA-directed RNA polymerase subunit beta OS=Anaero...	[more]
RPOB_ANADE	5.169e-23	69.57	DNA-directed RNA polymerase subunit beta OS=Anaero...	[more]
RPOB_ANAD2	5.169e-23	69.57	DNA-directed RNA polymerase subunit beta OS=Anaero...	[more]
RPOBC_HELPY	5.169e-23	71.43	Bifunctional DNA-directed RNA polymerase subunit b...	[more]
RPOBC_HELPS	5.169e-23	71.43	Bifunctional DNA-directed RNA polymerase subunit b...	[more]
RPOBC_HELPJ	5.169e-23	71.43	Bifunctional DNA-directed RNA polymerase subunit b...	[more]
RPOBC_HELPH	5.169e-23	71.43	Bifunctional DNA-directed RNA polymerase subunit b...	[more]
RPOBC_HELAH	5.169e-23	71.43	Bifunctional DNA-directed RNA polymerase subunit b...	[more]
RPOB_ZYMMO	6.751e-23	57.61	DNA-directed RNA polymerase subunit beta OS=Zymomo...	[more]
RPOB_SPHWW	6.751e-23	68.12	DNA-directed RNA polymerase subunit beta OS=Sphing...	[more]

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Properties


Property Name	Value
Genbank description	CSAJ-PNP1248H24 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248H24 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bp
GGGCCGGTTACTCCGCAATTTAGACAAAAATGGAATTGTGATGCTGGGAT
CTTGGGTAGAGACCGGCGATATTTTAGTAGGTAAATTAACGCCTCAGGCG
GCGAAAGAATCATCGTATGCTCCGGAAGATAGATTATTACGGGCCATACT
TGACATTCAGGTATCCACTCCAAAGGAAACTTGCCTAAAACTACCTATAG
GTGGTAGGGGTCGCGTTATTGATGTGAGATGGGTCCAGAAAAAGGGGGGT
TCTAGTTATAATCCAGAAACGATTTGTGTATATATTTTACAGAAACGTGA
AATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCG
TTTCAAAAATTTTGCCTAGACAGGATATGCCTTATTTGCAAGATGGAAGG
CCTGTTGATATGGTTTTCAACCCACTAGGAGTACCCTCGCGAATGAATGT
AGGACAGATATTTGAATGCTCGCTCGGGTTAGCGGGGGGTCTGCTAAATC
GACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCG
AGAAAACTCGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACCGCGAA
TCCATGGGTATTTGAGCCGGAATACCCGGGAAAAAGCAGAATATTTGATG
GACGAACGGGAGATCCTTTTG