DR406026
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_COFAR (DNA-directed RNA polymerase subunit beta OS=Coffea arabica GN=rpoB PE=3 SV=1) HSP 1 Score: 417.157 bits (1071), Expect = 3.984e-116 Identity = 205/221 (92.76%), Postives = 211/221 (95.48%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLDK+GIVMLGSWVETGDILVGKLTPQ KESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QKKGGSSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKIL RQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRKLVFSELY+ASKQTANPWVFE EYPGKSRIFDGRTG+PF Sbjct: 712 LLRNLDKSGIVMLGSWVETGDILVGKLTPQMVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILTRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTANPWVFEAEYPGKSRIFDGRTGNPF 932
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_AMBTC (DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda GN=rpoB PE=3 SV=2) HSP 1 Score: 417.157 bits (1071), Expect = 3.984e-116 Identity = 203/221 (91.86%), Postives = 209/221 (94.57%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NGIVMLGSWVETGD+LVGKLTPQ AKESSYAPEDRLLR IL IQVST KETCLKLPIGGRGRVIDVRW+QKKG SSYNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRI PFDERYEQEASRKLVF ELYEASK+TANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 718 LLRNLDRNGIVMLGSWVETGDVLVGKLTPQTAKESSYAPEDRLLRVILGIQVSTAKETCLKLPIGGRGRVIDVRWIQKKGASSYNPEKIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRITPFDERYEQEASRKLVFPELYEASKRTANPWVFEPEYPGKSRIFDGRTGDPF 938
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_NYMAL (DNA-directed RNA polymerase subunit beta OS=Nymphaea alba GN=rpoB PE=3 SV=1) HSP 1 Score: 416.772 bits (1070), Expect = 5.203e-116 Identity = 204/221 (92.31%), Postives = 209/221 (94.57%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NGIVMLGSWVETGD+LVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW QKKGGS YNPE I VYI QKR+IKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQ+FECSLGLAG LL RHYRI PFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 717 LLRNLDRNGIVMLGSWVETGDVLVGKLTPQTAKESSYAPEDRLLRAILGIQVSTAKETCLKLPIGGRGRVIDVRWGQKKGGSIYNPEMIRVYISQKRKIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQMFECSLGLAGDLLGRHYRITPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 937
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_LOTJA (DNA-directed RNA polymerase subunit beta OS=Lotus japonicus GN=rpoB PE=3 SV=1) HSP 1 Score: 416.001 bits (1068), Expect = 8.874e-116 Identity = 202/221 (91.40%), Postives = 211/221 (95.48%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLDKNG+V+LGSWVE GDILVGKLTPQ AKESSYAPEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+ KKGGS YNPETI +YILQKREIKVGDKVAGRHGNKGIVSKIL RQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAG +L+RHYRIAPFDERYEQEASRKLVFSELY+ASKQT+NPW+FEPEYPGKSRIFDGRTG PF Sbjct: 716 LLRNLDKNGLVILGSWVEAGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWLHKKGGSGYNPETIHIYILQKREIKVGDKVAGRHGNKGIVSKILARQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERYEQEASRKLVFSELYQASKQTSNPWIFEPEYPGKSRIFDGRTGTPF 936
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_IPOPU (DNA-directed RNA polymerase subunit beta OS=Ipomoea purpurea GN=rpoB PE=3 SV=1) HSP 1 Score: 412.535 bits (1059), Expect = 9.812e-115 Identity = 199/220 (90.45%), Postives = 209/220 (95.00%), Query Frame = 2 Query: 11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 +RNLDKNGIV GSWVETGD+LVGKLTPQ KESSYAPEDRLLRAIL IQVST KETCLK+PIGGRGRVIDVRW+QKKGGSSYNPE I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VD+VFNPLGVPSRMN+GQIFECSLGLAG LL+RHYRIAPFDERYEQEASRK+VFSELYEASKQTANPW FEPEYPGKSRIFDGRTG+PF Sbjct: 714 IRNLDKNGIVKQGSWVETGDVLVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKVPIGGRGRVIDVRWIQKKGGSSYNPEMIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDLVFNPLGVPSRMNLGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKVVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGNPF 933
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PHAVU (DNA-directed RNA polymerase subunit beta OS=Phaseolus vulgaris GN=rpoB PE=3 SV=1) HSP 1 Score: 411.379 bits (1056), Expect = 2.186e-114 Identity = 198/221 (89.59%), Postives = 212/221 (95.93%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLDKNGIV+LGSWVETGD+LVGKLTPQ AKESSY+PEDRLLRAIL IQVST KETCLKLPIGGRGRVIDVRW+QKKGGSSYNPETI + ILQKREIKVGDKVAGRHGNKGIVSKIL RQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGL+GG+L++HYRI PFDERYEQEASRKLVFSELYEASK+T+NPW+FEPEYPGKS+IFDGRTG+ F Sbjct: 716 LLRNLDKNGIVILGSWVETGDVLVGKLTPQMAKESSYSPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIRISILQKREIKVGDKVAGRHGNKGIVSKILSRQDMPYLQDGEPVDMVFNPLGVPSRMNVGQIFECSLGLSGGMLDKHYRITPFDERYEQEASRKLVFSELYEASKKTSNPWIFEPEYPGKSKIFDGRTGNSF 936
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_DIOEL (DNA-directed RNA polymerase subunit beta OS=Dioscorea elephantipes GN=rpoB PE=3 SV=1) HSP 1 Score: 409.068 bits (1050), Expect = 1.085e-113 Identity = 201/221 (90.95%), Postives = 206/221 (93.21%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 LLRNLD+NGIVMLGSW+ETGDILVGKLTPQ A ESSYAPEDRLLRAIL IQVST KET LKL IGGRGRVIDVRW+QK+GGS YNPE I VYI QKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LL RHYRIAPFDERYEQEASRKLVFSELY ASKQT NPWVFEPEYPGKSRIFDGRTGDPF Sbjct: 716 LLRNLDRNGIVMLGSWIETGDILVGKLTPQTATESSYAPEDRLLRAILGIQVSTAKETSLKLSIGGRGRVIDVRWIQKRGGSIYNPEMIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKRHYRIAPFDERYEQEASRKLVFSELYSASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 936
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CUSEX (DNA-directed RNA polymerase subunit beta OS=Cuscuta exaltata GN=rpoB PE=3 SV=1) HSP 1 Score: 405.601 bits (1041), Expect = 1.199e-112 Identity = 196/221 (88.69%), Postives = 206/221 (93.21%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 L+RNLDKNGIV+ GSWVE GD+LVGKLTPQ KESSYAPEDRLLRAIL IQVS KETCLK+PIGGRGRVIDVRW+QKKGG YNPE I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VD+VFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRK+VFSELYEASKQTANPW FEPEYPGKSRIFDGRTG+ F Sbjct: 716 LIRNLDKNGIVLQGSWVEPGDVLVGKLTPQVVKESSYAPEDRLLRAILGIQVSASKETCLKVPIGGRGRVIDVRWIQKKGGYGYNPEKIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDLVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKIVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGNTF 936
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CUSRE (DNA-directed RNA polymerase subunit beta OS=Cuscuta reflexa GN=rpoB PE=2 SV=2) HSP 1 Score: 399.053 bits (1024), Expect = 1.123e-110 Identity = 193/221 (87.33%), Postives = 203/221 (91.86%), Query Frame = 2 Query: 8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 L+RNLDKNGIV+ GSWVE GD+LVGKLTPQ KES+YAPEDRLLRAIL I VS KETCLK+PIG RGRVIDVRW+QKKGG YNPE I VYILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGR VD+VFNPLGVPSRMNVGQIFECSLGLAG LL+RHYRIAPFDERYEQEASRK+VFSELYEASKQTANPW FEPEYPGKSRIFDGRTG F Sbjct: 716 LIRNLDKNGIVLQGSWVEPGDVLVGKLTPQVVKESAYAPEDRLLRAILGIPVSASKETCLKVPIGARGRVIDVRWIQKKGGYGYNPEKIRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRSVDLVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKIVFSELYEASKQTANPWAFEPEYPGKSRIFDGRTGKTF 936
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PHAAO (DNA-directed RNA polymerase subunit beta OS=Phalaenopsis aphrodite subsp. formosana GN=rpoB PE=3 SV=2) HSP 1 Score: 395.201 bits (1014), Expect = 1.621e-109 Identity = 194/222 (87.39%), Postives = 204/222 (91.89%), Query Frame = 2 Query: 5 RLLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670 RLLRNLD+NGIVMLGSW+ETGDILVGKLTPQ A ESSYAPEDRLLRAIL IQVST KET L+LPIGGRGRVIDVRW+ ++G S+ NPE I VYI QKREIKVGDKVAGRHGNKGI+SKIL RQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFECSLGLAG LL +HYRI PFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGD F Sbjct: 715 RLLRNLDRNGIVMLGSWIETGDILVGKLTPQTASESSYAPEDRLLRAILGIQVSTSKETSLRLPIGGRGRVIDVRWIHRRGVSNSNPERIRVYISQKREIKVGDKVAGRHGNKGIISKILSRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLKKHYRIGPFDERYEQEASRKLVFSELYEASKKTKNPWVFEPEYPGKSRIFDGRTGDLF 936 The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bpback to top |