DR406026

Overview
NameDR406026
Unique NameDR406026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3949 contig Csv1_Contig3949:517..1187. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ORYNI (DNA-directed RNA polymerase subunit beta OS=Oryza nivara GN=rpoB PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  725 LLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_MAIZE (DNA-directed RNA polymerase subunit beta OS=Zea mays GN=rpoB PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASKQT NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  725 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPFDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGAPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPF 941          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_HORVU (DNA-directed RNA polymerase subunit beta OS=Hordeum vulgare GN=rpoB PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 186/223 (83.41%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLDKNG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  726 LLRNLDKNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPF 942          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_WHEAT (DNA-directed RNA polymerase subunit beta OS=Triticum aestivum GN=rpoB PE=3 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 6.174e-101
Identity = 185/223 (82.96%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  726 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPF 942          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_AGRST (DNA-directed RNA polymerase subunit beta OS=Agrostis stolonifera GN=rpoB PE=3 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 6.174e-101
Identity = 185/223 (82.96%), Postives = 196/223 (87.89%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVETGDILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  726 LLRNLDRNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPF 942          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_LOLPR (DNA-directed RNA polymerase subunit beta OS=Lolium perenne GN=rpoB PE=3 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 3.064e-100
Identity = 184/223 (82.51%), Postives = 195/223 (87.44%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICV--YILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLRNLD+NG+V LGSWVET DILVGKLTPQ A ESSY  E  LLRAI  ++VST KET LKLPIGGRGRVIDV+W+Q+      +P  I V  YILQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNVGQIFE SLGLAG LL +HYRIAPFDERYEQEASRKLVFSELYEASK+T NPWVFEPEYPGKSRIFDGRTGDPF
Sbjct:  726 LLRNLDRNGVVRLGSWVETSDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQR------DPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPF 942          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PINTH (DNA-directed RNA polymerase subunit beta OS=Pinus thunbergii GN=rpoB PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.801e-92
Identity = 160/221 (72.40%), Postives = 188/221 (85.07%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLR+LD+NG+VMLGSW+ETGD+LVGKLTPQ  +ES   PE RLL+ I  I+VST +E CL+ PIGGRGRVIDVRW+ +   S  N ET+ VYI QKR+I+VGDKV+GRHGNKGI+S +LPRQDMPYLQ+G PVDMV NPLGVPSRMNVGQIFEC  GLAG  +N+HYRI PFDE+YE+EASRKLVF ELY+AS+QTANPWVFEP++PGK R+ DGRTGD F
Sbjct:  721 LLRHLDENGLVMLGSWIETGDVLVGKLTPQTIEESLCTPEGRLLQTIFGIEVSTARENCLRAPIGGRGRVIDVRWINRVDDSGDNAETVHVYISQKRKIQVGDKVSGRHGNKGIISIVLPRQDMPYLQNGIPVDMVLNPLGVPSRMNVGQIFECLPGLAGNPMNKHYRITPFDEKYEREASRKLVFPELYKASEQTANPWVFEPDHPGKHRLIDGRTGDVF 941          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_ANTFO (DNA-directed RNA polymerase subunit beta OS=Anthoceros formosae GN=rpoB PE=2 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.801e-92
Identity = 162/221 (73.30%), Postives = 191/221 (86.43%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LLR+LD++G+V+ GSWVETGD+LVGKLTPQ  +ES  APE +LL+AI  IQV T KETCLK+P+GGRGRVID++W+ ++  S+   E + VYILQKREI+VGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMV +PLGVPSRMNVGQIFEC LGLAG  L +HYR+ PFDERYE+EASRKLVFSEL+EAS+QTANPW+FE + PGKS + DGRTGD F
Sbjct:  717 LLRHLDESGLVLPGSWVETGDVLVGKLTPQETEESLRAPEGKLLQAIFGIQVVTAKETCLKVPLGGRGRVIDIKWIYQEKTSTTYAEIVHVYILQKREIQVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVLSPLGVPSRMNVGQIFECLLGLAGDFLQKHYRVTPFDERYEREASRKLVFSELHEASRQTANPWLFESDNPGKSGLLDGRTGDIF 937          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_PINKO (DNA-directed RNA polymerase subunit beta OS=Pinus koraiensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.071e-92
Identity = 160/220 (72.73%), Postives = 188/220 (85.45%), Query Frame = 2
Query:   11 LRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPF 670
            LR+LD+NG+VMLGSW+ETGD+LVGKLTPQ  +ES   PE RLL+ I  I+VST +E+CL+ PIGG+GRVIDVRW+ +   S  N ET+ VYI QKR+I+VGDKVAGRHGNKGI+S ILPRQDMPYLQ+G PVDMV NPLGVPSRMNVGQIFEC  GLAG L+N+HYRI PFDE+YE+EASRKLVF ELY+AS+QTANPWVFEP++PGK R+ DGRTG  F
Sbjct:  722 LRHLDENGLVMLGSWIETGDVLVGKLTPQTTEESLCTPEGRLLQTIFGIEVSTARESCLRAPIGGKGRVIDVRWINRVDDSGDNAETVHVYISQKRKIQVGDKVAGRHGNKGIISIILPRQDMPYLQNGIPVDMVLNPLGVPSRMNVGQIFECLPGLAGNLMNKHYRITPFDEKYEREASRKLVFPELYKASEQTANPWVFEPDHPGKHRLIDGRTGAVF 941          
BLAST of DR406026 vs. ExPASy Swiss-Prot
Match: RPOB_CYCTA (DNA-directed RNA polymerase subunit beta OS=Cycas taitungensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.071e-92
Identity = 165/219 (75.34%), Postives = 187/219 (85.39%), Query Frame = 2
Query:    8 LLRNLDKNGIVMLGSWVETGDILVGKLTPQAAKESSYAPEDRLLRAILDIQVSTPKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPETICVYILQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGLLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGD 664
            LLR+LD NG+VMLGSWVETGD+LVGKLTPQ A+ES  APE RLL+AI  IQVS+ +E+CL++PIGGRGRVIDVRW+ K+     N E + VYI QKR+I+VGDKVAGR GNKGI+SKILPRQDMPYLQDG  VDMV NPLGV SRMNVGQIFEC  GLAG L+NRHYRI PFDERYE+EASRK VF ELY AS+QTANPWVFEP +PGK+R+ DGRTGD
Sbjct:  718 LLRHLDGNGLVMLGSWVETGDVLVGKLTPQPAEESLRAPEGRLLQAIFGIQVSSARESCLRVPIGGRGRVIDVRWIHKEENFGDNAEVVHVYIFQKRKIQVGDKVAGRLGNKGIISKILPRQDMPYLQDGTSVDMVLNPLGVLSRMNVGQIFECLPGLAGNLMNRHYRITPFDERYEREASRKPVFPELYGASEQTANPWVFEPNHPGKNRLIDGRTGD 936          
The following BLAST results are available for this feature:
BLAST of DR406026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOB_ORYNI2.772e-10183.41DNA-directed RNA polymerase subunit beta OS=Oryza ... [more]
RPOB_MAIZE2.772e-10183.41DNA-directed RNA polymerase subunit beta OS=Zea ma... [more]
RPOB_HORVU2.772e-10183.41DNA-directed RNA polymerase subunit beta OS=Hordeu... [more]
RPOB_WHEAT6.174e-10182.96DNA-directed RNA polymerase subunit beta OS=Tritic... [more]
RPOB_AGRST6.174e-10182.96DNA-directed RNA polymerase subunit beta OS=Agrost... [more]
RPOB_LOLPR3.064e-10082.51DNA-directed RNA polymerase subunit beta OS=Lolium... [more]
RPOB_PINTH1.801e-9272.40DNA-directed RNA polymerase subunit beta OS=Pinus ... [more]
RPOB_ANTFO1.801e-9273.30DNA-directed RNA polymerase subunit beta OS=Anthoc... [more]
RPOB_PINKO3.071e-9272.73DNA-directed RNA polymerase subunit beta OS=Pinus ... [more]
RPOB_CYCTA3.071e-9275.34DNA-directed RNA polymerase subunit beta OS=Cycas ... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248H24 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248H24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406026 ID=DR406026; Name=DR406026; organism=Citrus sinensis; type=EST; length=671bp
GGGCCGGTTACTCCGCAATTTAGACAAAAATGGAATTGTGATGCTGGGAT
CTTGGGTAGAGACCGGCGATATTTTAGTAGGTAAATTAACGCCTCAGGCG
GCGAAAGAATCATCGTATGCTCCGGAAGATAGATTATTACGGGCCATACT
TGACATTCAGGTATCCACTCCAAAGGAAACTTGCCTAAAACTACCTATAG
GTGGTAGGGGTCGCGTTATTGATGTGAGATGGGTCCAGAAAAAGGGGGGT
TCTAGTTATAATCCAGAAACGATTTGTGTATATATTTTACAGAAACGTGA
AATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCG
TTTCAAAAATTTTGCCTAGACAGGATATGCCTTATTTGCAAGATGGAAGG
CCTGTTGATATGGTTTTCAACCCACTAGGAGTACCCTCGCGAATGAATGT
AGGACAGATATTTGAATGCTCGCTCGGGTTAGCGGGGGGTCTGCTAAATC
GACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCG
AGAAAACTCGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACCGCGAA
TCCATGGGTATTTGAGCCGGAATACCCGGGAAAAAGCAGAATATTTGATG
GACGAACGGGAGATCCTTTTG
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