DR406000

Overview
NameDR406000
Unique NameDR406000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.667e-16
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ EA+LREHVP    DTLALACGPPPMIQFA+ PNLEKM YD  +S +VF
Sbjct:  568 SVGFVTEAVLREHVPEGGDDTLALACGPPPMIQFAISPNLEKMKYDMANSFVVF 621          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.667e-16
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXX-GDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            STGF+ EA+LREH+P    G++LALACGPPPMIQFA+QPNLEKM Y+ K+ LL+F
Sbjct:  863 STGFITEAVLREHIPEGLEGESLALACGPPPMIQFALQPNLEKMGYNVKEDLLIF 917          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA2_PHAVU (Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 3
Query:   12 GFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            GF+ EAI+REH+P    D+LA+ CGPPPMIQFAVQPNLEKM YD K+ LLVF
Sbjct:  839 GFITEAIMREHLPEASSDSLAMTCGPPPMIQFAVQPNLEKMGYDIKNDLLVF 890          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.942e-16
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ E ++REH+P    D LALACGPPPMIQFAV PNLEKM YD K+ LLVF
Sbjct:  847 SVGFVTEGVMREHLPEAGDDALALACGPPPMIQFAVNPNLEKMGYDVKNDLLVF 900          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.761e-16
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXX-GDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            STGF+ E +LREHVP    G++LALACGPPPMIQFA+QPNLEKM Y+ K+ LL+F
Sbjct:  857 STGFITEPVLREHVPEGLEGESLALACGPPPMIQFALQPNLEKMGYNVKEDLLIF 911          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 3
Query:    9 TGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            TGF+ E ILR+HVP    D LAL CGPPPMIQFAVQPNL+KM +D K+ LL+F
Sbjct:  874 TGFISEKILRDHVPAVGDDVLALTCGPPPMIQFAVQPNLDKMGFDIKEQLLIF 926          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.949e-15
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXX-GDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            STGF+ EAI+REH+P    G  LA+ACGPPPMIQFAVQPNLEKM Y+ K+  L+F
Sbjct:  863 STGFISEAIMREHIPDGLDGSALAMACGPPPMIQFAVQPNLEKMQYNIKEDFLIF 917          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 5.030e-15
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 3
Query:   12 GFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            GF+ E +LREHVP    DTLALACGPPPMI+FAV PNLEKM YD  +S +VF
Sbjct:  865 GFVTEEVLREHVPEGGDDTLALACGPPPMIKFAVSPNLEKMKYDMANSFIVF 916          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ E ILR HVP    DTLALACGPPPMI+FA+ PNLEKM YD  +S + F
Sbjct:  859 SVGFVTEDILRAHVPEGGDDTLALACGPPPMIKFAISPNLEKMKYDMANSFISF 912          
BLAST of DR406000 vs. ExPASy Swiss-Prot
Match: NIA1_HORVU (Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 3
Query:    6 STGFLIEAILREHVPXXXGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 167
            S GF+ E ILR HVP    DTLALACGPPPMI+FA+ PNLEKM YD  +S + F
Sbjct:  862 SVGFVTEDILRAHVPEGGDDTLALACGPPPMIKFAISPNLEKMKYDMANSFISF 915          
The following BLAST results are available for this feature:
BLAST of DR406000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NIA1_MAIZE2.667e-1670.37Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]
NIA1_ARATH2.667e-1669.09Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
NIA2_PHAVU3.484e-1671.15Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris G... [more]
NIA_LOTJA5.942e-1668.52Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NIA2_BRANA7.761e-1669.09Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA_SPIOL1.729e-1567.92Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NIA2_ARATH2.949e-1567.27Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA1_ORYSJ5.030e-1569.23Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NIA2_HORVU5.562e-1464.81Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]
NIA1_HORVU5.562e-1464.81Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248G19 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248G19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR406000 ID=DR406000; Name=DR406000; organism=Citrus sinensis; type=EST; length=387bp
GGGACAGTACGGGATTCCTTATAGAAGCAATCCTCAGGGAGCACGTCCCA
NNNGNNNCAGGCGATACTCTTGCATTGGCGTGTGGGCCTCCTCCGATGAT
TCAATTTGCCGTGCAGCCGAATTTGGAGAAAATGAACTACGATACCAAGG
ATTCGTTGCTGGTGTTTTAAATTAAACGCTGGGGGCAAGCACAGACGACG
ATACCAGCCGAGGTTGTACATATTTAAACGTCGAAGTTTTCAGCAGCAGT
TAAGTACTGCGTCACTCTATAGAGTCTATAAATAAATTCTCCCCGATCAA
TAACAAAAAAAAAAAAAATAAAAAATTAAAAATAAAAAAAAAAAAAAAAA
AAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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