DR405983

Overview
NameDR405983
Unique NameDR405983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.330e-45
Identity = 82/137 (59.85%), Postives = 112/137 (81.75%), Query Frame = 1
Query:  211 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            NA SGM V D+ K  FLEL+ K+T+R++VFKI+E +K+V+VEK G PT++Y+DF ASLP  +CRYAVYD+DFVT+ENCQKS+IFF A SP T+ +R+K++Y+ SKD+  REL GI  E+QATDP+E+ L+V ++RAN
Sbjct:   10 NAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.330e-45
Identity = 83/142 (58.45%), Postives = 115/142 (80.99%), Query Frame = 1
Query:  196 LETMANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            + + +NA+SGM V  D +  FLEL+ K+ +R+++FKIEEKQKQV+VEK G  T++Y+DF ASLP  +CRYA+YD+DFVT EN QKS+IFFIA SP T+R+R+KM+Y+ SKDR K+ELDG   E+QATDP+E+ L+V ++RA+
Sbjct:    4 MRSHSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERAH 145          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.260e-44
Identity = 77/142 (54.23%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  196 LETMANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            + + ANA+SG+ V  +CK  FLEL+ K+++R+++FKI++K K+V+VEK G  T++++DF  SLP  +CRYA+YD+DFVT ENCQKS+IFF+A SP  +R+R+KM+YA SK+RF+RELDG+  E+QATDPSE+ +++ ++RA+
Sbjct:    4 VRSRANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.066e-43
Identity = 83/138 (60.14%), Postives = 113/138 (81.88%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            MANA SG+AV+D+C LKF EL++KR +RFI FK+++K K+++V+++G+   +Y+DFT SLP  +CRYA+YD+DFVTAE+ QKSRIF+I  SP +A+V+SKM+YA S  +FK  L+GIQVELQATD SE+ LD  KDRA
Sbjct:    1 MANARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.477e-40
Identity = 73/135 (54.07%), Postives = 106/135 (78.52%), Query Frame = 1
Query:  214 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            A +GM V D+C   F+++K K+ +R+IVFKIEEK ++V V+K+G   ++Y D   SLP ++CRYAV+D+DFVT +NC+KS+IFFIA SP+ +++R+K++YA SKD  +R L+GI  ELQATDP+EMG D+ +DRA
Sbjct:    8 ATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRA 142          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.349e-38
Identity = 71/135 (52.59%), Postives = 104/135 (77.04%), Query Frame = 1
Query:  214 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            A  GM V ++C+  F+E+K K+ +RF+V+KI+E+ + V+V+K+G P + YE+  A+LP ++CRYAV+D+DFVT +NCQKS+IFFIA SP  +R+R+K++YA SK   +R LDG+  E+QATD SEMG DV + RA
Sbjct:    8 ATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRA 142          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.005e-38
Identity = 68/130 (52.31%), Postives = 105/130 (80.77%), Query Frame = 1
Query:  232 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            V +  K  F ELK ++ +R+++FKI++++++++VEK G P ++Y+DFTASLPA++CRYAVYD DFV+ +NC+KS+IFFI+ SP  +R+R+K IYA S+++F+ ELDG+  E+QATDP +M L+V + RAN
Sbjct:   20 VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.126e-38
Identity = 68/127 (53.54%), Postives = 99/127 (77.95%), Query Frame = 1
Query:  238 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            DDCK  F+E+K K+ +R++V+K+EEK ++V V+K+G   ++Y+D  ASLP ++CRYAV+D+D+VT +NC+ S+IFFI  SP+ +R+R KM+YA SK   +R LDG+  ELQATDP+EMG D  +DRA
Sbjct:    3 DDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.126e-38
Identity = 75/150 (50.00%), Postives = 108/150 (72.00%), Query Frame = 1
Query:  205 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFTASLPAEECRYAVYDYDFVTAE-----------NCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            MANA SG+AV ++CK +F EL+A R +RF+VFKI++  +QV+V+++G     +++ TASLPA+ CRYAVYD+DF  ++              +S+IFF++ SP  A VRSKM+YA S + FK+ELDG+Q++LQATDPSE+ LDV KD  +
Sbjct:    1 MANATSGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.182e-34
Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = 1
Query:  226 MAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKL------GEPTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 621
            M +HDDCKL FLELK +RT+R IV+KIE+   QVIVEK       GE  Q+YE+F  SLPA+ECRYA+ D +FV  E     +I FIA SP TA++R KMIY+ +KDRFKRELDGIQVE  ATD +++ LD  + R N
Sbjct:    1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNM-QVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
The following BLAST results are available for this feature:
BLAST of DR405983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ADF6_ARATH4.330e-4559.85Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF2_ORYSJ4.330e-4558.45Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF11_ORYSJ1.260e-4454.23Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF3_MAIZE1.066e-4360.14Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF5_ARATH5.477e-4054.07Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF5_ORYSJ1.349e-3852.59Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF10_ORYSJ3.005e-3852.31Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF9_ARATH5.126e-3853.54Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF3_ORYSJ5.126e-3850.00Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]
ADF11_ARATH1.182e-3457.25Putative actin-depolymerizing factor 11 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248G02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405983 ID=DR405983; Name=DR405983; organism=Citrus sinensis; type=EST; length=734bp
GGGGAGTCACCAGTCAGATTTTTCATAATATTAAAAAAGCAAAGCAAAAA
GAAAATTTGAGAAAAAAAACCAGAATAAAAACAATATAAAACAAGTAGAA
GAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTTCCT
TCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGA
AACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGC
TAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTT
AAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCC
AACTCAAACCTATGAAGATTTTACTGCCAGCCTTCCTGCTGAGGAGTGCC
GATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAA
AGCAGGATTTTCTTCATTGCATGATCTCCCGACACTGCAAGAGTAAGAAG
CAAGATGATTTATGCGGGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATG
GCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGAC
GTATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTG
AGATTGGTTTTTATCTTTTGTGCTTTACCTAAAGGTGANNNNNNANNAGT
TTGTGGCGGCAGCTTGAATCTAACTGAATTATGA
back to top