DR405983 | Citrus Genome Database

Overview


Name	DR405983
Unique Name	DR405983
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	734

Libraries


Library Name	Type
Mature Juice Sac from Navel Orange in pTriplEx2 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6307	contig	Csv1_Contig6307:1..733.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 53/152 (34.87%), Postives = 85/152 (55.92%), Query Frame = 1

Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI  +P++A ++SKMIYA SKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 53/152 (34.87%), Postives = 85/152 (55.92%), Query Frame = 1

Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI  +P++A ++SKMIYA SKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 53/152 (34.87%), Postives = 85/152 (55.92%), Query Frame = 1

Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI  +P++A ++SKMIYA SKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 53/152 (34.87%), Postives = 85/152 (55.92%), Query Frame = 1

Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 618
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI  +P++A ++SKMIYA SKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 1

Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQA 573
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI  +P+ A ++SKMIYA SKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: CADF2_PLAFX (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate HB3) PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 45/125 (36.00%), Postives = 75/125 (60.00%), Query Frame = 1

Query:  220 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPT--QTYEDFTA----SLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQAT 576
            SG+ V D+C  +F +LK K  +++I+++IE  + +VIV+ L +    ++Y+D       +L   ECRY + D    T E   ++RI+FI  SPD A+ + KM+YA SK+   R+++GI   L+ T
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYE-EVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT 126

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: CADF2_PLAF7 (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0326 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 45/125 (36.00%), Postives = 75/125 (60.00%), Query Frame = 1

Query:  220 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPT--QTYEDFTA----SLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQAT 576
            SG+ V D+C  +F +LK K  +++I+++IE  + +VIV+ L +    ++Y+D       +L   ECRY + D    T E   ++RI+FI  SPD A+ + KM+YA SK+   R+++GI   L+ T
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYE-EVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT 126

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 1

Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQA 573
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI  +P+ A ++SKMIYA SKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 1

Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQA 573
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI  +P+ A ++SKMIYA SKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 1

Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQA 573
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI  +P+ A ++SKMIYA SKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

The following BLAST results are available for this feature:

BLAST of DR405983 vs. ExPASy Swiss-Prot

BLAST of DR405983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72


Match Name	E-value	Identity	Description
COF2_PIG	2.317e-14	34.87	Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4	[more]
COF2_MOUSE	2.317e-14	34.87	Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1	[more]
COF2_HUMAN	2.317e-14	34.87	Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1	[more]
COF2_BOVIN	2.317e-14	34.87	Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1	[more]
COF1_MOUSE	2.317e-14	37.23	Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3	[more]
CADF2_PLAFX	2.317e-14	36.00	Cofilin/actin-depolymerizing factor homolog 2 OS=P...	[more]
CADF2_PLAF7	2.317e-14	36.00	Cofilin/actin-depolymerizing factor homolog 2 OS=P...	[more]
COF1_SHEEP	3.026e-14	37.23	Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3	[more]
COF1_PIG	3.026e-14	37.23	Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3	[more]
COF1_MACFA	3.026e-14	37.23	Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAJ-PNP1248G02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248G02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR405983 ID=DR405983; Name=DR405983; organism=Citrus sinensis; type=EST; length=734bp
GGGGAGTCACCAGTCAGATTTTTCATAATATTAAAAAAGCAAAGCAAAAA
GAAAATTTGAGAAAAAAAACCAGAATAAAAACAATATAAAACAAGTAGAA
GAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTTCCT
TCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGA
AACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGC
TAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTT
AAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCC
AACTCAAACCTATGAAGATTTTACTGCCAGCCTTCCTGCTGAGGAGTGCC
GATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAA
AGCAGGATTTTCTTCATTGCATGATCTCCCGACACTGCAAGAGTAAGAAG
CAAGATGATTTATGCGGGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATG
GCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGAC
GTATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTG
AGATTGGTTTTTATCTTTTGTGCTTTACCTAAAGGTGANNNNNNANNAGT
TTGTGGCGGCAGCTTGAATCTAACTGAATTATGA