DR405983

Overview
NameDR405983
Unique NameDR405983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQA 573
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI  +P+ A ++SKMIYA SKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF2_XENTR (Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK--------LGEPT-QTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 615
            ASG+ V+D+    F E+K          K+  + ++F +   +K++IVE+        +GE     Y  F   LP ++CRY +YD  + T E+ +K  + FI  +PD A ++SKMIYA SKD  K++  GI+ E Q       GLD  KDR
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVPDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEM 591
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ ++  +FF+  +P+ A ++SKMIYA SKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLW-APELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEM 591
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ ++  +FF+  +P+ A ++SKMIYA SKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLW-APELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGE---------PTQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEM 591
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ ++  +FF+  +P+ A ++SKMIYA SKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEVKKRKKAVIFCLSPDKKCIIVEEGKEILVGDVGVTVTDPFKHFVEMLPEKDCRYALYDASFETKESKKEELMFFLW-APEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEM 591
            ASG+ V D+    F ++K          K+  + ++F +   +K +IVE+  E          T  ++ F   LP ++CRYA+YD  F T E+ ++  +FF+  +P+ A ++SKMIYA SKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLW-APELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDL 143          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 46/143 (32.17%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEM 591
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          T  ++ F   LP ++CRYA+YD  F T E+ ++  +FF+  +P+ A ++SKMIYA SKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLW-APEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 46/143 (32.17%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP---------TQTYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQATDPSEM 591
            ASG+ V D+    F ++K          K+  + ++F +   +K ++VE+  E          T  ++ F   LP ++CRYA+YD  F T E+ ++  +FF+  +P+ A ++SKMIYA SKD  K++  GI+ E QA  P ++
Sbjct:    2 ASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIVVEEGKEILVGDVGATITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLW-APEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDL 143          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.271e-12
Identity = 49/136 (36.03%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQ 570
            ASG+ V DD    F E+K         AK+  + +VF + + +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+  +P+ A ++SKMIYA SKD  K+ L GI+ E Q
Sbjct:    2 ASGVMVSDDVIKVFNEMKVRHQLSPEDAKKRKKAVVFCLSDDKKTIILEPGKEILQGDIGCNVEDPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of DR405983 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  217 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFTASLPAEECRYAVYDYDFVTAENCQKSRIFFIA*SPDTARVRSKMIYAGSKDRFKRELDGIQVELQ 570
            ASG+ V DD    F ++K         AK+  + +VF + E +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+  +P+ A ++SKMIYA SKD  K+   GI+ E Q
Sbjct:    2 ASGVMVSDDVIKVFNDMKVRHQLSPEEAKKRKKAVVFCLSEDKKMIILEPGKEILQGDVGCNVDDPYKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of DR405983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
COF1_BOVIN3.026e-1437.23Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COF2_XENTR5.162e-1435.10Cofilin-2 OS=Xenopus tropicalis GN=cfl2 PE=2 SV=1[more]
DEST_PIG1.502e-1332.87Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN1.502e-1332.87Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_CHICK1.502e-1332.87Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]
DEST_BOVIN1.502e-1332.87Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
DEST_RAT2.562e-1332.17Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]
DEST_MOUSE2.562e-1332.17Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]
COF1A_XENLA1.271e-1236.03Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF1_XENTR3.699e-1235.29Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248G02 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405983 ID=DR405983; Name=DR405983; organism=Citrus sinensis; type=EST; length=734bp
GGGGAGTCACCAGTCAGATTTTTCATAATATTAAAAAAGCAAAGCAAAAA
GAAAATTTGAGAAAAAAAACCAGAATAAAAACAATATAAAACAAGTAGAA
GAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTTCCT
TCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGA
AACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGC
TAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTT
AAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCC
AACTCAAACCTATGAAGATTTTACTGCCAGCCTTCCTGCTGAGGAGTGCC
GATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAA
AGCAGGATTTTCTTCATTGCATGATCTCCCGACACTGCAAGAGTAAGAAG
CAAGATGATTTATGCGGGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATG
GCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGAC
GTATTTAAAGACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTG
AGATTGGTTTTTATCTTTTGTGCTTTACCTAAAGGTGANNNNNNANNAGT
TTGTGGCGGCAGCTTGAATCTAACTGAATTATGA
back to top