DR405941

Overview
NameDR405941
Unique NameDR405941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6305 contig Csv1_Contig6305:1..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR405941 vs. ExPASy Swiss-Prot
Match: PDK_SCHPO ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC644.11c PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.297e-18
Identity = 50/131 (38.17%), Postives = 79/131 (60.31%), Query Frame = 1 
Query:  373 DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLDEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVQVARNASEHARCVCLREYG--SAPDFNIYGDPSFTFPYVPSHLH 759
            +F  ++  I+ RH+NV   +AL +Q+ +++ +     +  + I  FLDRFYMSRIGIRML+GQ++ L +  P  + +G I T+ +  Q+   A+E+A+ +C   YG   AP+  I  DPS    YV SHL+
Sbjct:  166 NFAYLLNTIRTRHDNVAVEIALDIQEYRRKTN-----QIDNSIQIFLDRFYMSRIGIRMLLGQYIALVSEPPRENYVGVISTRANIYQIIEGAAENAKYICRLAYGLFEAPEIQIICDPSLEMMYVESHLN 291
The following BLAST results are available for this feature:
BLAST of DR405941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDK_SCHPO1.297e-1838.17[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248E01 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405941 ID=DR405941; Name=DR405941; organism=Citrus sinensis; type=EST; length=768bp
GGGGAGGAATTGGATTTTTTTGTGAGAAAGCAGAAGCCAGAAGCAGCAAT
GGCTGCTAAGAAATTGTCGGAGACGTTTTCGAAGACCTTGATCGAGGAGG
TTGGGCGATGGGGATGCATGAAACAGACAGGTGTGAGCTTGAGGTACATG
ATGGAGTTTGGCTCAAAACCTACAGACAAGAATTTGCTAATTTCTGCTCA
GTTTCTTCACAAAGAGCTTCCAATTAGAATCGCCAGACGAGCAATTGAGC
TCGAGACACTTCCTTACGGTTTATCCGAGAAGCCTGCCGTTTTGAAGGTT
CGAGACTGGTATTTGGACTCATTTCGTGATTTGAGGTCGTTTCCTGACAT
CAGAAGTACGAGTGATGAGAGGGATTTTACGCAAATGATTAAGGCGATTA
AGGTGAGGCATAATAATGTGGTGCCCATGATGGCGTTGGGGCTGCAACAA
TTGAAGAAAGAGATGGATCCCAAGATTGTTTACGAGGATCTTGATGAGAT
TCATCAGTTTCTGGATCGGTTTTACATGTCTAGGATCGGAATTCGTATGC
TTATTGGGCAGCATGTAGAATTGCACAATCCCAACCCTCCACCTCATTGT
ATTGGCTACATAGACACAAAAATGTCTCCAGTGCAGGTTGCTAGGAATGC
TAGTGAGCATGCACGTTGTGTTTGTCTGCGGGAGTATGGCAGTGCACCCG
ATTTTAATATCTACGGTGATCCCAGTTTTACATTCCCTTACGTCCCTTCA
CACTTGCATCTCATGGGT
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