DR405910

Overview
NameDR405910
Unique NameDR405910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_STAA1 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.732e-41
Identity = 82/149 (55.03%), Postives = 105/149 (70.47%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 520
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE H  +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS+ESA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_PROM5 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.732e-41
Identity = 85/148 (57.43%), Postives = 104/148 (70.27%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 520
            E+TF+ IKPDGVQRG + EII RFEKKGF L GLK +   +  A+ H      +PFF  L+ +I+SGPVVAMIWEGEGV+ + R IIGAT P ++ PGTIRGDLAI  GRNIIHGSD  E+A+ EI LWF    I +W++S   W  E
Sbjct:    4 ERTFLAIKPDGVQRGYIAEIIGRFEKKGFKLVGLKQLIPSKQLAQDHYGVHRERPFFKDLVNFISSGPVVAMIWEGEGVILSARKIIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEETAKFEINLWFDQHEICDWETSDSEWRVE 151          
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_PROM0 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.732e-41
Identity = 82/145 (56.55%), Postives = 105/145 (72.41%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 511
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ H      +PFFG L+++I+SGPVVAM+WEGEGV+ + R +IG+T P ++ PGTIRGDLAI  GRNIIHGSD  ++A+ EI LWF +  +  W++S   W
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGSTKPLEAEPGTIRGDLAIDIGRNIIHGSDGEDTAKFEIDLWFNEEELCEWETSDLKW 148          
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_PROMP (Nucleoside diphosphate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.140e-40
Identity = 84/145 (57.93%), Postives = 104/145 (71.72%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPW 511
            E+TF+ IKPDGVQRG V +II RFEKKGF L GLK +   +  A+ H      +PFF  L+E+I+SGPVVAMIWEGEGV+ + R +IGAT P ++ PGTIRGDLAI  GRNIIHGSD  E+A+ EI LWF    I +W++S   W
Sbjct:    4 ERTFLAIKPDGVQRGYVSDIIGRFEKKGFKLVGLKQLIPTKQLAQDHYGVHRERPFFKDLVEFISSGPVVAMIWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGRNIIHGSDGEETAKFEINLWFNQDEICDWETSDSEW 148          
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_PROM4 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ndk PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.140e-40
Identity = 83/148 (56.08%), Postives = 102/148 (68.92%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 520
            E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L  LK +   R  AE+H      +PFF  L+++ITSGPV+AMIWEGEGV+   R +IG+T P  + PGTIRGDLAI  GRN+IHGSD  E+A  EI LWF    + +W  S   W  E
Sbjct:    4 ERTFLAIKPDGVQRGLVGEILSRFERKGFKLIALKQLIPSRALAEQHYGVHRERPFFKGLVDFITSGPVIAMIWEGEGVILGARKLIGSTKPLDADPGTIRGDLAIDIGRNVIHGSDGPETASFEIGLWFESSELSDWNPSDQLWRVE 151          
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_LISMO (Nucleoside diphosphate kinase OS=Listeria monocytogenes GN=ndk PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.489e-40
Identity = 81/147 (55.10%), Postives = 106/147 (72.11%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWI 514
            MEQT++M+KPDGV+RGL+GEI+ R EKKG  +   KLM +DR  AEKH  +   K FF  LI +ITSGPV AM+ EG+  + T R ++G TNP ++ PGTIR D AI T RN+IHGSDS ESAQ+EI L+F PD  +++Q ++  WI
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI 147          
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_STAAW (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MW2) GN=ndk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.945e-40
Identity = 81/149 (54.36%), Postives = 105/149 (70.47%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 520
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE H  +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS++SA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLDSAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_STAAS (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MSSA476) GN=ndk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.945e-40
Identity = 81/149 (54.36%), Postives = 105/149 (70.47%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 520
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE H  +   KPF+  LI +ITS PV AM+ EGE  V   R IIG+TNP++++PG+IRGDL +  GRNIIHGSDS++SA++EI LWF +  I ++ S    W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLDSAEREINLWFNENEITSYASPRDAWLYE 149          
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_EXISA (Nucleoside diphosphate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=ndk PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.945e-40
Identity = 75/133 (56.39%), Postives = 100/133 (75.19%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 475
            ME+TF+M+KPDGV+RGL+GEII RFE KG++L  L+++T     AE H  +   KPFFG L+E++TSGPVVAM WEGE +V   R +IG T P  + PGTIRGD A    +N+IHGSDSV+SA++E++LWF +
Sbjct:    1 MEKTFLMVKPDGVKRGLIGEIISRFENKGYTLNRLEMVTPSVEVAEAHYAEHKEKPFFGELVEFLTSGPVVAMEWEGEDIVAVSRLMIGKTKPVDAQPGTIRGDFASTMSQNVIHGSDSVDSAERELSLWFAE 133          
BLAST of DR405910 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.541e-40
Identity = 76/137 (55.47%), Postives = 100/137 (72.99%), Query Frame = 2
Query:   77 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHCEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN 487
            MEQTF+M+KPDGV+RGL+GEII R E+KGF ++ +K+M V    A+ H  + + KPFFG L+ ++TSGPVVA+  EGE VV   R +IG T P ++ PGTIRGD A     N+IHGSDSVESA++E+ LWF   P+N
Sbjct:    1 MEQTFLMVKPDGVERGLIGEIIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELVTFLTSGPVVALRVEGEDVVTVSRMMIGKTKPTEALPGTIRGDFANTMSENVIHGSDSVESAERELGLWFQGQPLN 137          
The following BLAST results are available for this feature:
BLAST of DR405910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAA18.732e-4155.03Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_PROM58.732e-4157.43Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM08.732e-4156.55Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMP1.140e-4057.93Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM41.140e-4056.08Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_LISMO1.489e-4055.10Nucleoside diphosphate kinase OS=Listeria monocyto... [more]
NDK_STAAW1.945e-4054.36Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAS1.945e-4054.36Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_EXISA1.945e-4056.39Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_EXIS22.541e-4055.47Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248C13 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248C13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405910 ID=DR405910; Name=DR405910; organism=Citrus sinensis; type=EST; length=645bp
GGGGATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACA
AGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATC
AAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATT
TGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGCTTATGACTGTGGACC
GCCCTTTTGCTGAGAAGCACTGTGAGGATTTGTCATCGAAGCCTTTCTTT
GGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTG
GGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCA
ACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTG
ACGGGCAGGAATATTATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAA
AGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCC
TTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATT
GTTCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTAT
GGTTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATT
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