DR405904

Overview
NameDR405904
Unique NameDR405904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6303 contig Csv1_Contig6303:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405904 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.403e-24
Identity = 56/153 (36.60%), Postives = 91/153 (59.48%), Query Frame = 2 
Query:  266 DGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSKAMGGDFPSKP-MSLYTTIWDA 721
            +G N+RL+L++ +GS   S   +  G    +IKL   ++AG   A+Y S+      THDE+DFEFLGN  G+P+   TN Y  G     RE++++ WF+PT  FH Y+I W  + ++++VD  PIR     ++ G  +P+K  M ++ ++W+A
Sbjct:   45 NGTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSSTG---STHDEIDFEFLGNATGQPYTIHTNLYAQGKG--NREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNA 192
[Close]
BLAST of DR405904 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 60/160 (37.50%), Postives = 90/160 (56.25%), Query Frame = 2 
Query:  206 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYQLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSKAMGGDFPS 685
            +++   Y   +G   L+ +   + ++L L++ SGSGF S  +Y  G+F+  IK P   + G+  +FY  +       HDEL F+ LG   G P+   TN Y  G    G+++R++LWFDPTK +H YS LW  N ++FYVD+ PIR  V SK     +PS
Sbjct:   22 VTWGNNYYQTWGHQALVINKTSE-LQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRS---SRHDELCFQILGK-NGPPYLLNTNMYLYGEG--GKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIR--VYSKNPDVYYPS 172
The following BLAST results are available for this feature:
BLAST of DR405904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH26_ARATH1.403e-2436.60Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH1.006e-2237.50Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248C05 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405904 ID=DR405904; Name=DR405904; organism=Citrus sinensis; type=EST; length=721bp
GGGGAACACACACCGTAACAAATTTTATTTATAGAAACCAAAAATAATAA
TGGATTGGTTTCTTTGCTCTCAATCAAAAAAATCATCAGCACCCTTCACT
CTAATTCTAATTCTGTTGTGTTGCTGCTCATCACCATCACTTGTGTTCAC
ATTCACAAACGCAGCGTCGTCGTTGTCGTCATCATCTGCTTTCAACCTCG
CCACCATCTCTTTCGATGAAGGCTACTCTCATCTTTTCGGCGACGGCAAT
CTCATTCGCTCCCCCGACGGCAAGAACGTTCGTCTCCTCCTCAACCGCTT
CTCCGGGTCCGGTTTTGTTTCGTCAAAGTTGTACAATCACGGGTTCTTTA
GCGCCATGATCAAGTTGCCATCGGATCACACGGCTGGCTTATGTGTTGCA
TTCTATACGTCAAACGGAGACGTGTTCCCAAAAACACACGACGAATTAGA
CTTTGAGTTTCTAGGAAACGTGGCTGGAAAACCGTGGAGGTTCCAAACAA
ATTTCTATGGAAATGGGAGCACGGCACGTGGCAGAGAAGAGAGATACCAG
CTTTGGTTTGATCCCACGAAGCAATTTCATAGATATAGCATTCTTTGGAC
AAGCAACAACATTATATTCTATGTGGATGAAGTACCGATAAGGGAAGTCG
TGCGCTCAAAGGCAATGGGTGGTGATTTCCCATCAAAGCCAATGTCATTG
TACACAACAATTTGGGATGCC
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