DR405898

Overview
NameDR405898
Unique NameDR405898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13757 contig Csv1_Contig13757:45..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_PHANO (Mediator of RNA polymerase II transcription subunit 31 OS=Phaeosphaeria nodorum GN=SOH1 PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  169 GRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYP-HCLYFLELLQNANFRNAMAHP--ANK 411
            G  RF LELEFVQCLANP Y++YLA  +YF+   F+ YL YLQY+  P+YIKF+ +P   L  LELLQ   FR  +  P  ANK
Sbjct:   17 GFTRFELELEFVQCLANPVYLNYLATQKYFDKPEFVAYLDYLQYFAEPKYIKFLHHPGPTLRALELLQQERFRQDIITPGLANK 100          
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_NEUCR (Mediator of RNA polymerase II transcription subunit 31 OS=Neurospora crassa GN=soh-1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 1
Query:  118 ASDAPSSPKKVYKDPD-DGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYP-HCLYFLELLQNANFRNAMAHP 402
            A + P+ P     +P   G  RF LELEFVQ L NP Y+++LA  +   + AFI YL YLQYW RP Y+K+I YP   L  LELLQ   FR  +  P
Sbjct:   12 AREPPAPPGSGADEPKYGGYTRFELELEFVQALGNPLYLNHLASRKLLSNPAFIAYLDYLQYWSRPPYLKYITYPGPTLKNLELLQQEKFRQDIISP 108          
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_USTMA (Mediator of RNA polymerase II transcription subunit 31 OS=Ustilago maydis GN=SOH1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  133 SSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN-ANFRNAMAHPANKELAHRQQFFFWKNYRN 459
            +SP +  +     +  F  +LEF+  LANP Y+++LA +      +F  YLKYL Y++ P+Y+K++ YP  L+FL+LLQN   FR A   PA       +Q   W  +R+
Sbjct:   17 ASPSRDEQRRQANQAAFSRDLEFLSSLANPYYLNHLALSGALSSPSFKRYLKYLDYFRHPKYVKYLHYPQALHFLDLLQNEEEFRLACRDPAFAGEVMAKQIGHWATWRD 126          
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_ASHGO (Mediator of RNA polymerase II transcription subunit 31 OS=Ashbya gossypii GN=SOH1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  136 SPKKVYKDPDDGRQ---RFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN 372
            S +  ++   +G Q   RF +ELEFVQ LAN  Y+ +L  Q++ ++D  F  YLKYL+YW  P Y +FI+YP+CL+ L+LL +
Sbjct:    5 SSEPPFEPSSEGEQLPSRFEVELEFVQSLANIPYVTFLLTQHQIWQDPRFKAYLKYLEYWCEPPYTQFIVYPNCLFVLKLLNS 87          
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_YEAST (Mediator of RNA polymerase II transcription subunit 31 OS=Saccharomyces cerevisiae GN=SOH1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  124 DAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELL 366
            +AP++P     D +    RF +ELEF+Q LAN  Y+ YL  Q + ++   F  YLKYL+YW  P Y + I+YP+CL+ L+LL
Sbjct:    7 NAPATPSS---DQNPLPTRFEVELEFIQSLANIQYVTYLLTQQQIWKSPNFKNYLKYLEYWCNPPYSQCIVYPNCLFILKLL 85          
BLAST of DR405898 vs. ExPASy Swiss-Prot
Match: MED31_KLULA (Mediator of RNA polymerase II transcription subunit 31 OS=Kluyveromyces lactis GN=SOH1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  178 RFLLELEFVQCLANPTYIHYL-AQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELL 366
            RF +ELEFVQ LAN  Y+ YL  Q + ++D  F  YLKYL+YW  PEY + I+YP+ L+ L+LL
Sbjct:   19 RFEIELEFVQSLANIPYVTYLLTQLQLWQDPKFKRYLKYLEYWHEPEYAQCIVYPNSLFVLKLL 82          
The following BLAST results are available for this feature:
BLAST of DR405898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MED31_PHANO9.958e-1754.76Mediator of RNA polymerase II transcription subuni... [more]
MED31_NEUCR3.784e-1647.42Mediator of RNA polymerase II transcription subuni... [more]
MED31_USTMA2.296e-1336.36Mediator of RNA polymerase II transcription subuni... [more]
MED31_ASHGO8.723e-1344.58Mediator of RNA polymerase II transcription subuni... [more]
MED31_YEAST2.149e-1143.90Mediator of RNA polymerase II transcription subuni... [more]
MED31_KLULA2.806e-1153.13Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248B20 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248B20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405898 ID=DR405898; Name=DR405898; organism=Citrus sinensis; type=EST; length=688bp
GGGGTCCTGCAAACTGCTATTTCTGTTAATCTTCCAATTGATATAATTTG
TTAAAATTAATTTTCAATTTGTAAAAAGTGATAAAATAAGATGGCCGCTG
CCAAGGACGGTGAAGAAGCATCCGATGCCCCATCCTCGCCAAAGAAGGTG
TATAAAGATCCAGACGACGGGAGACAACGCTTTTTGCTTGAACTGGAATT
CGTTCAATGTCTTGCTAATCCCACTTACATTCACTATTTGGCTCAGAATC
GCTATTTTGAAGACGAGGCTTTCATTGGTTACTTGAAATATCTTCAGTAC
TGGCAACGGCCGGAGTACATTAAATTTATAATGTATCCGCATTGCCTCTA
TTTTCTTGAACTTCTACAAAATGCAAACTTCCGCAATGCTATGGCACATC
CTGCCAACAAGGAGTTGGCACATAGGCAGCAATTCTTTTTCTGGAAGAAC
TATAGAAACAATCGACTAAAGCACATTTTACCAAGGCCTCTTCCTGAACC
TGCTGAGGCTCCACCACCTGCTGCTGCTCCACCTCTGCCACCTGCACCAC
CTGTGCCGACTCCTGTGACAGCTGCTTCAGGGCCAGCCCTTTCTCCTATG
CAGTATGGAATTCCCCCAGGATCAGCTCTGATGAAAAATGATATGAGGAG
TAGCAGCATTGATCGAAGAAAAAGGAAGAAAGATGGTT
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