DR405893

Overview
NameDR405893
Unique NameDR405893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6302 contig Csv1_Contig6302:1..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CHP1_RAT (Calcium-binding protein p22 OS=Rattus norvegicus GN=Chp PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 742
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G  +SDEQ   +  +  ++A
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEA 163          
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CHP1_MOUSE (Calcium-binding protein p22 OS=Mus musculus GN=Chp PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 742
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G  +SDEQ   +  +  ++A
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEA 163          
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CHP1_BOVIN (Calcium-binding protein p22 OS=Bos taurus GN=CHP PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 742
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G  +SDEQ   +  +  ++A
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEA 163          
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CHP1_PONAB (Calcium-binding protein p22 OS=Pongo abelii GN=CHP PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 742
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G  +SDEQ   +  +  ++A
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEA 163          
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CHP1_HUMAN (Calcium-binding protein p22 OS=Homo sapiens GN=CHP PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 742
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G  +SDEQ   +  +  ++A
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEA 163          
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CANB2_RAT (Calcineurin subunit B type 2 OS=Rattus norvegicus GN=Ppp3r2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 39/119 (32.77%), Postives = 71/119 (59.66%), Query Frame = 2
Query:  380 FSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVDG-----LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 721
            F   EI  L + F ++D +  G +S DEF+S+PE   NPL  R++ + D      ++F++F+   S FS K   +QK++  F++YD D +G +S  ++ +VL+ + G+ + D Q +Q++
Sbjct:   15 FDHDEIKRLGRSFKKMDLDKSGSLSVDEFMSLPELQQNPLVGRVIDIFDTDGNGEVDFREFIVGTSQFSVKGDEEQKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDWQLQQLV 133          
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CANB2_MOUSE (Calcineurin subunit B type 2 OS=Mus musculus GN=Ppp3r2 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13
Identity = 40/121 (33.06%), Postives = 72/121 (59.50%), Query Frame = 2
Query:  374 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVDG-----LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 721
            N F Q+EI  L + F +LD +  G +S +EF+ +PE   NPL  R++ + D      ++F +F+   S FS K   +QK++  F++YD D +G +S  ++ +VL+ + G+ + D Q +Q++
Sbjct:   13 NHFDQEEIRRLGKSFRKLDLDKSGSLSIEEFMRLPELQQNPLVGRVIDIFDTDGNGEVDFHEFIVGTSQFSVKGDEEQKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDWQLQQLV 133          
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CANB2_BOVIN (Calcineurin subunit B type 2 OS=Bos taurus GN=PPP3R2 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.680e-13
Identity = 39/119 (32.77%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  380 FSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVDG-----LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 721
            F + EI  L +RF +LD ++   +S  EF S+PE   NPL QR++ + D      ++F++F+   S FS +   +QK++  F +YD D +G +S  ++ +VL+ + G  + D Q +Q++
Sbjct:   15 FDEDEIKRLRKRFKKLDLDSSSALSVKEFTSMPELQENPLVQRVIDVFDTDGDGQVDFREFILGTSQFSVRGDEEQKLRFAFSIYDMDKDGYISNGELFQVLKMMVGDNLKDWQLQQLV 133          
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CHP2_MOUSE (Calcineurin B homologous protein 2 OS=Mus musculus GN=Chp2 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 50/166 (30.12%), Postives = 82/166 (49.40%), Query Frame = 2
Query:  311 MGTASSMLTQY-DIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF----------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 742
            MG+ SS +    D+E +++     FSQ  ++ LY RF  LDR+ KGF+S  +   +   A+NPL  R++          L F  F   L+ F                    S   K++  F++YD D +GK+S N++L+VLR + G  ++DEQ E +  +  ++A
Sbjct:    1 MGSRSSHIALIPDVEHIRRETG--FSQASLLRLYHRFQALDRDEKGFLSRLDLQQIGALAVNPLGDRIIDSFFPNGSQRLYFAGFARVLAYFRPIDEEDATLRDPKQPEPLNSRMNKLRFAFQLYDLDRDGKISRNEMLQVLRLMVGVQVTDEQLESITDRTVQEA 164          
BLAST of DR405893 vs. ExPASy Swiss-Prot
Match: CIB1_BOVIN (Calcium and integrin-binding protein 1 OS=Bos taurus GN=CIB1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 43/162 (26.54%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  311 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQL--------DRNAKGFISADEFLSVPEFAMNPLSQRLLKMV------DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG----SFMSDEQREQVLTQVFKDA 742
            MG + S L++  + E Q       ++QEI+  ++RFC+L        + + +  +S ++ LS+PE   NP  +R+ K+       D L+F+DF+  LSVFS  A+   K    F+++D D +G ++  D+ +++  L+G    + +S  + +Q++  + +++
Sbjct:    1 MGGSGSRLSKELLAEYQDL--TFLTKQEILLAHRRFCELLPQEHRSVEESLQARVSLEQILSLPELKANPFKERICKVFSTSPSRDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSQLVNCLTGESEDTRLSASEMKQLIDNILEES 160          
The following BLAST results are available for this feature:
BLAST of DR405893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHP1_RAT3.166e-1429.81Calcium-binding protein p22 OS=Rattus norvegicus G... [more]
CHP1_MOUSE3.166e-1429.81Calcium-binding protein p22 OS=Mus musculus GN=Chp... [more]
CHP1_BOVIN3.166e-1429.81Calcium-binding protein p22 OS=Bos taurus GN=CHP P... [more]
CHP1_PONAB4.135e-1429.81Calcium-binding protein p22 OS=Pongo abelii GN=CHP... [more]
CHP1_HUMAN4.135e-1429.81Calcium-binding protein p22 OS=Homo sapiens GN=CHP... [more]
CANB2_RAT9.212e-1432.77Calcineurin subunit B type 2 OS=Rattus norvegicus ... [more]
CANB2_MOUSE1.571e-1333.06Calcineurin subunit B type 2 OS=Mus musculus GN=Pp... [more]
CANB2_BOVIN2.680e-1332.77Calcineurin subunit B type 2 OS=Bos taurus GN=PPP3... [more]
CHP2_MOUSE6.601e-1230.12Calcineurin B homologous protein 2 OS=Mus musculus... [more]
CIB1_BOVIN5.588e-1126.54Calcium and integrin-binding protein 1 OS=Bos taur... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248B15 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248B15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405893 ID=DR405893; Name=DR405893; organism=Citrus sinensis; type=EST; length=752bp
GGGGACGAGGAATATCCCACGCAATTCTCCGAAAATCAACGGCCGATAAA
ACGACGAAACATAAAAAAGAATGTTACTGCGTGACAGAGAATAATCGGTG
ATGAGGATGAACATCAGATTCCTCGTCATCTAGTACAAACAAAATACTAT
TCTGTGTGTTTTCAATGGCTCGATGATGACGAAGGAGTTTCTGTCATCTA
TATTTCCCGATACTTCATCTTCATCTAAACTCATCTCCTAGCGGTCGGTT
CTTTTTTTCCTACATTTTCTGTTTGTTTCCCGAGAAAACCCAGTTTTGGA
GCGAGAATCAATGGGGACTGCCTCGTCTATGCTAACTCAATATGATATTG
AAGAGGTTCAACAGCACTGCCACAATCTATTTTCTCAACAAGAAATAGTG
TCGTTGTACCAAAGGTTTTGCCAGCTAGATAGAAATGCCAAGGGATTCAT
CTCTGCAGATGAGTTCTTGTCGGTGCCTGAATTTGCAATGAATCCACTTT
CTCAGAGGTTGCTAAAGATGGTGGATGGGTTGAACTTCAAGGATTTTGTG
GCCTTCTTGTCTGTTTTCAGTGCTAAGGCAAGCATGCAGCAGAAAGTTCA
GCTTATTTTCAAAGTGTACGACTCAGACTGTAATGGAAAGGTTTCTTTCA
ATGACATATTGGAAGTGCTGCGGGATTTGTCTGGTTCTTTTATGTCCGAT
GAGCAAAGAGAGCAAGTCTTGACCCAAGTATTCAAGGATGCAGGTTACAC
AA
back to top