DR405889

Overview
NameDR405889
Unique NameDR405889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6302 contig Csv1_Contig6302:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405889 vs. ExPASy Swiss-Prot
Match: CHP1_CHICK (Calcium-binding protein p22 OS=Gallus gallus GN=CHP PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 685
            AS++L   +IEE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G
Sbjct:    5 ASTLLRDEEIEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDQNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG 144          
BLAST of DR405889 vs. ExPASy Swiss-Prot
Match: CANB2_MOUSE (Calcineurin subunit B type 2 OS=Mus musculus GN=Ppp3r2 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 37/110 (33.64%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  374 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVDG-----LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGS 688
            N F Q+EI  L + F +LD +  G +S +EF+ +PE   NPL  R++ + D      ++F +F+   S FS K   +QK++  F++YD D +G +S  ++ +VL+ + G+
Sbjct:   13 NHFDQEEIRRLGKSFRKLDLDKSGSLSIEEFMRLPELQQNPLVGRVIDIFDTDGNGEVDFHEFIVGTSQFSVKGDEEQKLRFAFRIYDMDNDGFISNGELFQVLKMMVGN 122          
BLAST of DR405889 vs. ExPASy Swiss-Prot
Match: CHP1_RAT (Calcium-binding protein p22 OS=Rattus norvegicus GN=Chp PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 685
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG 144          
BLAST of DR405889 vs. ExPASy Swiss-Prot
Match: CHP1_MOUSE (Calcium-binding protein p22 OS=Mus musculus GN=Chp PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 685
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG 144          
BLAST of DR405889 vs. ExPASy Swiss-Prot
Match: CHP1_BOVIN (Calcium-binding protein p22 OS=Bos taurus GN=CHP PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 685
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVG 144          
BLAST of DR405889 vs. ExPASy Swiss-Prot
Match: CHP1_PONAB (Calcium-binding protein p22 OS=Pongo abelii GN=CHP PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 685
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQVLRMMVG 144          
BLAST of DR405889 vs. ExPASy Swiss-Prot
Match: CHP1_HUMAN (Calcium-binding protein p22 OS=Homo sapiens GN=CHP PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  320 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMV-----DGLNFKDFVAFLSVF---------------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 685
            AS++L   ++EE+++     FS  +I  LY RF  LD+   G +S ++F  +PE A+NPL  R++        D +NF+ F+  L+ F                   S   K+   F++YD D + K+S +++L+VLR + G
Sbjct:    5 ASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQVLRMMVG 144          
BLAST of DR405889 vs. ExPASy Swiss-Prot
Match: CANB2_BOVIN (Calcineurin subunit B type 2 OS=Bos taurus GN=PPP3R2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 36/107 (33.64%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  380 FSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVD-----GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 685
            F + EI  L +RF +LD ++   +S  EF S+PE   NPL QR++ + D      ++F++F+   S FS +   +QK++  F +YD D +G +S  ++ +VL+ + G
Sbjct:   15 FDEDEIKRLRKRFKKLDLDSSSALSVKEFTSMPELQENPLVQRVIDVFDTDGDGQVDFREFILGTSQFSVRGDEEQKLRFAFSIYDMDKDGYISNGELFQVLKMMVG 121          
The following BLAST results are available for this feature:
BLAST of DR405889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CHP1_CHICK4.441e-1230.99Calcium-binding protein p22 OS=Gallus gallus GN=CH... [more]
CANB2_MOUSE5.801e-1233.64Calcineurin subunit B type 2 OS=Mus musculus GN=Pp... [more]
CHP1_RAT7.576e-1230.28Calcium-binding protein p22 OS=Rattus norvegicus G... [more]
CHP1_MOUSE7.576e-1230.28Calcium-binding protein p22 OS=Mus musculus GN=Chp... [more]
CHP1_BOVIN7.576e-1230.28Calcium-binding protein p22 OS=Bos taurus GN=CHP P... [more]
CHP1_PONAB9.894e-1230.28Calcium-binding protein p22 OS=Pongo abelii GN=CHP... [more]
CHP1_HUMAN9.894e-1230.28Calcium-binding protein p22 OS=Homo sapiens GN=CHP... [more]
CANB2_BOVIN9.894e-1233.64Calcineurin subunit B type 2 OS=Bos taurus GN=PPP3... [more]

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Properties
Property NameValue
Genbank descriptionCSAJ-PNP1248B11 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone CSAJ-PNP1248B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405889 ID=DR405889; Name=DR405889; organism=Citrus sinensis; type=EST; length=698bp
GGGGACGAGGAATATCCCACGTAATTCTCCGAAAATCAACGGCCGATAAA
ACGACGAAACATAAAAAAGAATGTTACTGCGTGACAGAGAATAATCGGTG
ATGAGGATGAACATCAGATTCCTCGTCATCTAGTACAAACAAAATACTAT
TCTGTGTGTTTTCAATGGCTCGATGATGACGAAGGAGTTTCTGTCATCTA
TATTTCCCGATACTTCATCTTCATCTAAACTCATCTCCTAGCGGTCGGTT
CTTTTTTTCCTACATTTTCTGTTTGTTTCCCGAGAAAACCCAGTTTTGGA
GCGAGAATCAATGGGGACTGCCTCGTCTATGCTAACTCAATATGATATTG
AAGAGGTTCAACAGCACTGCCACAATCTATTTTCTCAACAAGAAATAGTG
TCGTTGTACCAAAGGTTTTGCCAGCTAGATAGAAATGCCAAGGGATTCAT
CTCTGCAGATGAGTTCTTGTCGGTGCCTGAATTTGCAATGAATCCACTTT
CTCAGAGGTTGCTAAAGATGGTGGATGGGTTGAACTTCAAGGATTTTGTG
GCCTTCTTGTCTGTTTTCAGTGCTAAGGCAAGCATGCAGCAGAAAGTTCA
GCTTATTTTCAAAGTGTACGACTCAGACTGTAATGGAAAGGTTTCTTTCA
ATGACATATTGGAAGTGCTGCGGGATTTGTCTGGTTCTTTTATGTCCG
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